PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.01G214400.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family CO-like
Protein Properties Length: 382aa    MW: 43150 Da    PI: 6.6053
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.01G214400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box18.54.1e-062367240
             zf-B_box  2 eerkCpeHeekelqlfCedCqqllCedClleeHkg......Htvv 40
                         + r C+ +++  + l+C+ ++  lC +C  e H+       Ht++
  Manes.01G214400.1.p 23 QRRLCDYCNHTTALLYCRADSAKLCISCDREVHSTnqlfckHTRS 67
                         6789******99*********************668888888875 PP
2zf-B_box24.17.3e-0868110441
             zf-B_box   4 rkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvp 41 
                            C+ ++e ++++fCe+ ++ +C++C  e H +      H+++p
  Manes.01G214400.1.p  68 LLCDSCDESPVSIFCETEHSVFCHNCDWERH-RlslssvHNRRP 110
                          57*****************************.558888888877 PP
3CCT639.3e-22337379143
                  CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkq 43 
                          R+ a++RYkeK+ktR+++K+irYesRKa+AesR R+KGrF+k 
  Manes.01G214400.1.p 337 RDSAISRYKEKKKTRRYDKHIRYESRKARAESRIRIKGRFAKM 379
                          899**************************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003363.1E-102269IPR000315B-box-type zinc finger
PROSITE profilePS5011910.2672269IPR000315B-box-type zinc finger
CDDcd000212.16E-72569No hitNo description
PROSITE profilePS5011910.32465111IPR000315B-box-type zinc finger
PfamPF006434.3E-568110IPR000315B-box-type zinc finger
CDDcd000212.40E-669111No hitNo description
SMARTSM003360.370111IPR000315B-box-type zinc finger
PROSITE profilePS5101714.763337379IPR010402CCT domain
PfamPF062034.4E-16337379IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 382 aa     Download sequence    Send to blast
MSDSHRPPHD AQTMKPQHEQ ITQRRLCDYC NHTTALLYCR ADSAKLCISC DREVHSTNQL  60
FCKHTRSLLC DSCDESPVSI FCETEHSVFC HNCDWERHRL SLSSVHNRRP VEGFSGCRSL  120
TELISILGFE DLGDKKSLFL NEDSNGSAGS RLDDSDFGDG YSNFLIWETP AVVSIDDLIA  180
SSDSGQNFQA LGVPPLPKNR NAVCGQHKEE ILRQLRELAR LEPDSISENP DTKPINLFQP  240
SAAGQHIHEQ DTGLYKETTF NWISDTGETG NQVSVPSPLF RTNLEESFVV PDKQPNIGGS  300
VSRANGSHEE ETQYPFSTRM VPVFPKVGSH ELNSQERDSA ISRYKEKKKT RRYDKHIRYE  360
SRKARAESRI RIKGRFAKMD S*
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.01G214400.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021608609.10.0zinc finger protein CONSTANS-LIKE 13
RefseqXP_021608614.10.0zinc finger protein CONSTANS-LIKE 13
TrEMBLA0A251LUD60.0A0A251LUD6_MANES; Uncharacterized protein
STRINGcassava4.1_009967m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF70553145
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47890.11e-102B-box type zinc finger protein with CCT domain