PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.01G215400.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family C3H
Protein Properties Length: 475aa    MW: 50773.1 Da    PI: 8.6716
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.01G215400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH35.91.3e-114975127
                         --S---SGGGGTS--TTTTT-SS-SSS CS
              zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHgp 27
                         ++ + C +++rtG+C yG+rC+++H++
  Manes.01G215400.1.p 49 PGVPDCVYYMRTGFCGYGSRCRYNHPR 75
                         57899********************96 PP
2zf-CCCH40.44.8e-1396120327
                          S---SGGGGTS--TTTTT-SS-SSS CS
              zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                          +++C+f+++tGtCk+G++CkF+H++
  Manes.01G215400.1.p  96 EPPCQFYLKTGTCKFGASCKFHHPK 120
                          79*********************96 PP
3zf-CCCH37.73.4e-12142166327
                          S---SGGGGTS--TTTTT-SS-SSS CS
              zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                          + +C+++++tG+Ck+G +CkF+H++
  Manes.01G215400.1.p 142 EIECSYYLKTGQCKFGVTCKFHHPQ 166
                          568********************97 PP
4zf-CCCH36.58.3e-12295321127
                          --S---SGGGGTS--TTTTT-SS-SSS CS
              zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                          +++++C++++rtG Ck+G++C+++H++
  Manes.01G215400.1.p 295 PGEPECQYYLRTGDCKFGSSCRYHHPR 321
                          5799*********************96 PP
5zf-CCCH35.41.8e-11344366426
                          ---SGGGGTS--TTTTT-SS-SS CS
              zf-CCCH   4 elCrffartGtCkyGdrCkFaHg 26 
                           +C+f++r+G Ck+G++CkF H+
  Manes.01G215400.1.p 344 QPCSFYLRNGNCKFGATCKFDHP 366
                          69********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010314.5114876IPR000571Zinc finger, CCCH-type
SMARTSM003565.7E-74875IPR000571Zinc finger, CCCH-type
PfamPF006421.4E-85075IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.09E-65377IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.108.7E-55475IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.08993121IPR000571Zinc finger, CCCH-type
SMARTSM003561.1E-693120IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.36E-696120IPR000571Zinc finger, CCCH-type
PfamPF006421.9E-1096120IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.0E-598120IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.446139167IPR000571Zinc finger, CCCH-type
SMARTSM003561.8E-5139166IPR000571Zinc finger, CCCH-type
PfamPF006421.0E-9142166IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.44E-5143167IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.4E-4145165IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.817294322IPR000571Zinc finger, CCCH-type
SMARTSM003569.0E-6294321IPR000571Zinc finger, CCCH-type
PfamPF006423.6E-9296321IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.54E-6299323IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.7E-4300321IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.018340368IPR000571Zinc finger, CCCH-type
SMARTSM003561.5E-6340367IPR000571Zinc finger, CCCH-type
SuperFamilySSF902299.03E-6342371IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.8E-5344366IPR000571Zinc finger, CCCH-type
PfamPF006425.5E-9344366IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 475 aa     Download sequence    Send to blast
MELYGRNQAW NGSQSGQQPE WSPAGGETGL EESMWRLGLA TSESYPERPG VPDCVYYMRT  60
GFCGYGSRCR YNHPRNRVGV EAAVRATGEY PERVGEPPCQ FYLKTGTCKF GASCKFHHPK  120
HGGGSLSHVP LNTHGYPLRP GEIECSYYLK TGQCKFGVTC KFHHPQPAGS SLPESAPQFY  180
QPVQSPSITI PDQYGAASTS LRVRPPLLHG SYVQGAYGPV LLSPGVVPIP GWSPYSAPVS  240
PALSPGAQPA VGATSVYGIT QLSSSAPTAG PYPLPSSVAG LSSGTQKEQH FPERPGEPEC  300
QYYLRTGDCK FGSSCRYHHP RDRVLPRTNC VLSPLGLPLR PGIQPCSFYL RNGNCKFGAT  360
CKFDHPTGSI RYSPSASSLI DMPVAPYPVG SLLATLAPSS SSSELRPELI GVAKKDPYLN  420
RIPSTGNTSS SSVGLMFSQT GSVPLSELQH SSQSSVPLTS GRSTRQGGEV RHSS*
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.01G215400.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021608726.10.0zinc finger CCCH domain-containing protein 32-like
SwissprotQ84W910.0C3H32_ARATH; Zinc finger CCCH domain-containing protein 32
TrEMBLA0A2C9WP710.0A0A2C9WP71_MANES; Uncharacterized protein
STRINGcassava4.1_006834m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF98334117
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47850.30.0C3H family protein