PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Manes.01G215700.1.p

Organism

Manihot esculenta

Taxonomic ID

3983

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot

Family

NF-YB

Protein Properties

Length: 173aa MW: 19453.8 Da PI: 5.3922

Description

NF-YB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Manes.01G215700.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YB	172.2	5.8e-54	32	127	2	97
NF-YB 2 reqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyr 91 +eqd++lPianv+rimk++lP nakisk+aket+qecvsefisfvt+easdkc++ekrkt+ngdd++walatlGf+dy+eplk yl kyr Manes.01G215700.1.p 32 KEQDKLLPIANVGRIMKQILPPNAKISKEAKETMQECVSEFISFVTGEASDKCHKEKRKTVNGDDICWALATLGFDDYAEPLKRYLYKYR 121 89************************************************************************************** PP NF-YB 92 elegek 97 + ege+ Manes.01G215700.1.p 122 DQEGER 127 *997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.20.10	1.1E-51	28	137	IPR009072	Histone-fold
SuperFamily	SSF47113	3.42E-39	34	136	IPR009072	Histone-fold
Pfam	PF00808	8.8E-28	38	101	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain
PRINTS	PR00615	5.6E-20	65	83	No hit	No description
PROSITE pattern	PS00685	0	68	84	IPR003956	Transcription factor, NFYB/HAP3, conserved site
PRINTS	PR00615	5.6E-20	84	102	No hit	No description
PRINTS	PR00615	5.6E-20	103	121	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0043565	Molecular Function	sequence-specific DNA binding
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 173 aa Download sequence Send to blast
MVDNIGNNSE IASQKYNFAG ACNASCEDSI IKEQDKLLPI ANVGRIMKQI LPPNAKISKE 60 AKETMQECVS EFISFVTGEA SDKCHKEKRK TVNGDDICWA LATLGFDDYA EPLKRYLYKY 120 RDQEGERGSH RPSNNEERDD SLDYRGDLPM KSAASLNFQV VERSNTSLSR RF*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4g91_B	1e-43	31	122	1	92	Transcription factor HapC (Eurofung)
4g92_B	1e-43	31	122	1	92	Transcription factor HapC (Eurofung)
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Functional Description ? help Back to Top
Source	Description
UniProt	Component of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Manes.01G215700.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021624203.1	1e-127	nuclear transcription factor Y subunit B-4-like
Swissprot	O82248	5e-59	NFYB5_ARATH; Nuclear transcription factor Y subunit B-5
TrEMBL	A0A2C9WMZ5	1e-126	A0A2C9WMZ5_MANES; Uncharacterized protein
STRING	cassava4.1_022353m	1e-127	(Manihot esculenta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF805	32	131

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G47810.1	2e-61	nuclear factor Y, subunit B5

Link Out ? help Back to Top
Phytozome	Manes.01G215700.1.p

Publications ? help Back to Top
Zhao H, et al. The Arabidopsis thaliana Nuclear Factor Y Transcription Factors. Front Plant Sci, 2016. 7: p. 2045 [PMID:28119722]