PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.01G224400.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family GATA
Protein Properties Length: 136aa    MW: 14994.5 Da    PI: 10.3088
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.01G224400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA57.22.2e-183165135
                 GATA  1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35
                         C  C+tt Tp+WR+gp g+ktLCnaCG++yrkk++
  Manes.01G224400.1.p 31 CIDCHTTRTPCWRSGPAGPKTLCNACGIRYRKKKR 65
                         889*****************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004014.6E-132583IPR000679Zinc finger, GATA-type
SuperFamilySSF577162.57E-142566No hitNo description
PROSITE profilePS5011412.2022579IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.101.3E-152581IPR013088Zinc finger, NHR/GATA-type
CDDcd002023.65E-143081No hitNo description
PROSITE patternPS0034403156IPR000679Zinc finger, GATA-type
PfamPF003203.9E-163165IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 136 aa     Download sequence    Send to blast
MMIMDLKTNG QESDDMQNTP PSRSSELKKS CIDCHTTRTP CWRSGPAGPK TLCNACGIRY  60
RKKKRNLLGL DKGRAEKSRR KIAKSSRSEL GVPLKLGLMV AGREALLQEE WKRKLGEEEQ  120
AAILLMALSC GFVSA*
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.01G224400.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021629041.18e-95GATA transcription factor 16-like
TrEMBLA0A2C9WN502e-93A0A2C9WN50_MANES; Uncharacterized protein
STRINGcassava4.1_019027m9e-92(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15693298
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G49300.12e-28GATA transcription factor 16