PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.01G225300.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family C2H2
Protein Properties Length: 179aa    MW: 19284.9 Da    PI: 9.4199
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.01G225300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.20.000124668123
                         EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                         ++C+ C + F ++  L  H++ H
  Manes.01G225300.1.p 46 FECHFCQRAFANSQALGGHQNAH 68
                         89******************988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.71E-64373No hitNo description
Gene3DG3DSA:3.30.160.601.2E-44472IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015711.7394673IPR007087Zinc finger, C2H2
PROSITE patternPS0002804868IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 179 aa     Download sequence    Send to blast
MAESSAPSLQ SCHRPVTSAP KLFGFPLTDH DEVPAKAENC AESRKFECHF CQRAFANSQA  60
LGGHQNAHKR ERQKARRAQY HCDRRLLAAA SASSSQVVKA SSISSEGFSG IAAKFRPQAA  120
ASYCPSSTRP GLLLPSRIYV AQPLRLGAAM PSFVEFPPKL LCDEDVGTDL RLKLTPSV*
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.01G225300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021672753.11e-86zinc finger protein 4-like
TrEMBLA0A2C9WN591e-126A0A2C9WN59_MANES; Uncharacterized protein
STRINGcassava4.1_017396m1e-127(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF39032449
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G80730.13e-14zinc-finger protein 1