PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.01G228500.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family WRKY
Protein Properties Length: 260aa    MW: 29201.3 Da    PI: 5.4008
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.01G228500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY96.22.3e-3055113259
                          --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                 WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                          +D ++WrKYGqK++kgs++pr+YYrC+++ gC++kk+ver+++d ++++itY+++Hnh+
  Manes.01G228500.1.p  55 SDFWSWRKYGQKPIKGSPYPRGYYRCSTSkGCSAKKQVERCRSDASMMIITYTSNHNHP 113
                          699***********************9988****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.808.7E-3248115IPR003657WRKY domain
SuperFamilySSF1182904.45E-2651115IPR003657WRKY domain
SMARTSM007745.3E-3654114IPR003657WRKY domain
PROSITE profilePS5081131.15855115IPR003657WRKY domain
PfamPF031064.7E-2556113IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 260 aa     Download sequence    Send to blast
MDGSSCPPTL HSKVSELKSQ SQPSKRSCRK GDEKTVVTVR IGANAGKIKN EGPPSDFWSW  60
RKYGQKPIKG SPYPRGYYRC STSKGCSAKK QVERCRSDAS MMIITYTSNH NHPGPDLHST  120
NLNPQTKDSQ FPTQSTEDLR PATPKREQQE EENQSQNQAT VVISHEDDKE GHNFHYLQSP  180
TNCSQYMMIS QEEPFSAEKT DDTLSILLDE EPISCPALMT PKSEENDFFD ELEELPIYSA  240
FTSFMRTNFY DEGIPAVPS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5w3x_B7e-21551151779Disease resistance protein RRS1
5w3x_D7e-21551151779Disease resistance protein RRS1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.01G228500.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKT8276290.0KT827629.1 Manihot esculenta WRKY transcription factor 54 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021619579.10.0probable WRKY transcription factor 69 isoform X1
TrEMBLA0A140H8Q80.0A0A140H8Q8_MANES; WRKY transcription factor 54
STRINGcassava4.1_014297m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF97083241
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G29280.12e-34WRKY DNA-binding protein 65
Publications ? help Back to Top
  1. Wei Y, et al.
    Genome-Wide Identification and Expression Analysis of the WRKY Gene Family in Cassava.
    Front Plant Sci, 2016. 7: p. 25
    [PMID:26904033]