PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.01G230000.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family WRKY
Protein Properties Length: 305aa    MW: 33912.1 Da    PI: 6.5176
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.01G230000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY109.22e-34155212259
                          --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                 WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                          +Dgy+WrKYGqK vk+s+fprsYYrCtsa+C+vkk+vers +dp++v++tYeg+H+h+
  Manes.01G230000.1.p 155 EDGYRWRKYGQKAVKNSPFPRSYYRCTSASCNVKKRVERSFSDPSIVVTTYEGQHTHP 212
                          8********************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0381304.1E-1113304IPR017396PWRKY transcription factor, group IIc
Gene3DG3DSA:2.20.25.807.6E-35139213IPR003657WRKY domain
SuperFamilySSF1182903.27E-29146212IPR003657WRKY domain
PROSITE profilePS5081131.02149214IPR003657WRKY domain
SMARTSM007745.6E-41154213IPR003657WRKY domain
PfamPF031066.4E-27155212IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009624Biological Processresponse to nematode
GO:0009733Biological Processresponse to auxin
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 305 aa     Download sequence    Send to blast
MAMEGKEAVK IESIVGSSTF PDYIQSSYPF PGVFDFCEGD KSSLGFMELL GMQDFSPSMF  60
DVLQVPSMVQ PAASNPVVTK VESPEALNQP ATPNSSSISS ASSEALNDEL VKVADNEEEE  120
QQKTKKELKP KKTNQKRQRE PRFAFMTKSE VDHLEDGYRW RKYGQKAVKN SPFPRSYYRC  180
TSASCNVKKR VERSFSDPSI VVTTYEGQHT HPSAVMTRPS FVGAASESGF SATPFAMPMQ  240
RRSLLYQQEQ QPFVHSFTPL GFGYDGTTNA AFLHERRLHT TPGSALLEDH GLLQDVVPSH  300
MLKE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A8e-28144211774Probable WRKY transcription factor 4
2lex_A8e-28144211774Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00069PBMTransfer from AT2G47260Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.01G230000.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKT8275770.0KT827577.1 Manihot esculenta WRKY transcription factor 2 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021610227.10.0probable WRKY transcription factor 23
SwissprotO229001e-71WRK23_ARATH; WRKY transcription factor 23
TrEMBLA0A140H8K60.0A0A140H8K6_MANES; WRKY transcription factor
STRINGcassava4.1_012593m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF100234114
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47260.13e-64WRKY DNA-binding protein 23
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Wei Y, et al.
    Genome-Wide Identification and Expression Analysis of the WRKY Gene Family in Cassava.
    Front Plant Sci, 2016. 7: p. 25
    [PMID:26904033]
  4. Guo D,Qin G
    EXB1/WRKY71 transcription factor regulates both shoot branching and responses to abiotic stresses.
    Plant Signal Behav, 2016. 11(3): p. e1150404
    [PMID:26914912]
  5. Prát T, et al.
    WRKY23 is a component of the transcriptional network mediating auxin feedback on PIN polarity.
    PLoS Genet., 2018. 14(1): p. e1007177
    [PMID:29377885]