PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Manes.01G244000.3.p

Organism

Manihot esculenta

Taxonomic ID

3983

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot

Family

Dof

Protein Properties

Length: 238aa MW: 25566.4 Da PI: 9.2168

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Manes.01G244000.3.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	125.9	1.3e-39	20	80	2	62
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 ++++l+cprC+stntkfCyynnysl+qPryfCk+CrryWt+GG+lrnvPvGgg+rknk+s+ Manes.01G244000.3.p 20 PQEQLNCPRCNSTNTKFCYYNNYSLTQPRYFCKTCRRYWTEGGSLRNVPVGGGSRKNKRST 80 6899******************************************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	2.0E-27	19	78	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	1.6E-33	22	78	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	29.199	24	78	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	26	62	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 238 aa Download sequence Send to blast
MEEISSNACT RPVLERKARP QEQLNCPRCN STNTKFCYYN NYSLTQPRYF CKTCRRYWTE 60 GGSLRNVPVG GGSRKNKRST SSSAAAAAAA SSSPSSASSK LPDLNPPSLS QFPNPRTHEG 120 QDLNLAFPAI QESQALELLR TGIASRGLNS FIPTPMPDSN TLYSSGFPMQ EFKPTLSFSL 180 EGLGGRYGGQ ENGGRILFPF GEPKQLPSAT EVDQNKGQGT PSGGYWNGMF GGGGGSW*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor specifically involved in the maternal control of seed germination. Regulates transcription by binding to a 5'-AA[AG]G-3' consensus core sequence. May ensure the inactivity of a component that would be activated to trigger germination as a consequence of red light perception.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Manes.01G244000.3.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021611678.1	1e-173	dof zinc finger protein DOF3.7-like isoform X4
Swissprot	Q43385	5e-71	DOF37_ARATH; Dof zinc finger protein DOF3.7
TrEMBL	A0A2C9WNT3	1e-172	A0A2C9WNT3_MANES; Uncharacterized protein
TrEMBL	A0A2C9WNT8	1e-172	A0A2C9WNT8_MANES; Uncharacterized protein
STRING	cassava4.1_013831m	1e-141	(Manihot esculenta)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G61850.3	2e-62	Dof family protein

Link Out ? help Back to Top
Phytozome	Manes.01G244000.3.p