PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.01G249600.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family ERF
Protein Properties Length: 296aa    MW: 33801.4 Da    PI: 4.8288
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.01G249600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.73.3e-19105155155
                  AP2   1 sgykGVrwdkkrgrWvAeIrd.psengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                          ++y+GVr+++ +gr++AeIrd +     r +r++lg+f+taeeAa  +++a+ k++g
  Manes.01G249600.1.p 105 KKYRGVRQRP-WGRFAAEIRDpF-----RrTRVWLGTFDTAEEAAIVYDNAAIKIKG 155
                          59********.**********66.....45************************988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.05E-32105162No hitNo description
Gene3DG3DSA:3.30.730.101.8E-29106163IPR001471AP2/ERF domain
PfamPF008473.4E-12106155IPR001471AP2/ERF domain
SuperFamilySSF541719.15E-21106162IPR016177DNA-binding domain
PROSITE profilePS5103222.55106163IPR001471AP2/ERF domain
SMARTSM003803.8E-37106169IPR001471AP2/ERF domain
PRINTSPR003671.8E-10107118IPR001471AP2/ERF domain
PRINTSPR003671.8E-10129145IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 296 aa     Download sequence    Send to blast
MISSSSVKYS EHKTVTDKIA KCNDSNSTRV VRIYVTDGDA TDSSSDENEN PILGHQRIKK  60
HINEVRIKDC VECSNGRAHE CSKSRPNKQP LRKSTRDQLY YPESKKYRGV RQRPWGRFAA  120
EIRDPFRRTR VWLGTFDTAE EAAIVYDNAA IKIKGPNALT NFIKPPYDSG RESHSLSSPT  180
SVLRFQYTEE AGNEPQVLDG NVSRKAEEIK EKECDWRLDK QIDENDWKPV QCVAEEDPGG  240
YYFEELIDFE NHPPVCFDEC TIPDTELTDD FADVAVHLNL DGDFGSCLWN VDEYF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A3e-22105162159ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A5e-22103162262ATERF1
3gcc_A5e-22103162262ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtComponent of the cytokinin signaling pathway involved in cotyledons, leaves, and embryos development. Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250, ECO:0000269|PubMed:16832061}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.01G249600.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021612224.10.0ethylene-responsive transcription factor CRF6-like
SwissprotQ9SUE34e-46CRF4_ARATH; Ethylene-responsive transcription factor CRF4
TrEMBLA0A2C9WQC90.0A0A2C9WQC9_MANES; Uncharacterized protein
STRINGcassava4.1_024908m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF45034161
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G27950.12e-48cytokinin response factor 4
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Zwack PJ,Compton MA,Adams CI,Rashotte AM
    Cytokinin response factor 4 (CRF4) is induced by cold and involved in freezing tolerance.
    Plant Cell Rep., 2016. 35(3): p. 573-84
    [PMID:26650835]
  3. Raines T, et al.
    The cytokinin response factors modulate root and shoot growth and promote leaf senescence in Arabidopsis.
    Plant J., 2016. 85(1): p. 134-47
    [PMID:26662515]