PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.01G252200.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family WRKY
Protein Properties Length: 188aa    MW: 21388.5 Da    PI: 9.1501
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.01G252200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY104.74.9e-33108166159
                          ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                 WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                          ldDgy+WrKYGqK vk+s +prsYYrCt+++C+vkk+v+r ++d+++v++tYeg Hnh+
  Manes.01G252200.1.p 108 LDDGYRWRKYGQKAVKNSAYPRSYYRCTYPTCNVKKQVQRLSKDTSIVVTTYEGIHNHP 166
                          59********************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.4E-3394166IPR003657WRKY domain
SuperFamilySSF1182901.07E-28101167IPR003657WRKY domain
PROSITE profilePS5081128.908103168IPR003657WRKY domain
SMARTSM007743.7E-38108167IPR003657WRKY domain
PfamPF031065.2E-26109166IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 188 aa     Download sequence    Send to blast
MEDQEAPPPP PPPPLPQLPP SLFSPSLLAS SSLQPPFIEP QVLPDIDWVS LLSCQYGEGE  60
NKAKTLESAS VISEEEKGNK DRRKCGRMMK KHSRPRFAFQ TRSADDILDD GYRWRKYGQK  120
AVKNSAYPRS YYRCTYPTCN VKKQVQRLSK DTSIVVTTYE GIHNHPCEKL METLTPLLKQ  180
MQFLARF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A2e-2698165774Probable WRKY transcription factor 4
2lex_A2e-2698165774Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.01G252200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKT8276000.0KT827600.1 Manihot esculenta WRKY transcription factor 25 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021612474.11e-138probable WRKY transcription factor 43
SwissprotQ8VWQ49e-54WRK56_ARATH; Probable WRKY transcription factor 56
SwissprotQ9FFS38e-54WRK24_ARATH; Probable WRKY transcription factor 24
TrEMBLA0A140H8M91e-137A0A140H8M9_MANES; WRKY transcription factor 25
STRINGcassava4.1_033595m1e-137(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF32273471
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G41570.13e-56WRKY DNA-binding protein 24
Publications ? help Back to Top
  1. Wei Y, et al.
    Genome-Wide Identification and Expression Analysis of the WRKY Gene Family in Cassava.
    Front Plant Sci, 2016. 7: p. 25
    [PMID:26904033]