PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Manes.01G261300.1.p

Organism

Manihot esculenta

Taxonomic ID

3983

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot

Family

HD-ZIP

Protein Properties

Length: 819aa MW: 89101.1 Da PI: 6.084

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Manes.01G261300.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	65.4	7.9e-21	116	171	1	56
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 +++ +++t++q++eLe+lF+++++p++++r eL+++l L++rqVk+WFqNrR+++k Manes.01G261300.1.p 116 KKRYHRHTPQQIQELEALFKECPHPDEKQRLELSRRLCLETRQVKFWFQNRRTQMK 171 688999***********************************************999 PP
2	START	205.9	1.6e-64	322	546	1	206
HHHHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S.... CS START 1 elaeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqWdetla.... 77 ela++a++elvk+a+ +ep+W++s e +n +e++++f++ + + +ea+r++g+v+ + lve+l+d++ +W e+++ Manes.01G261300.1.p 322 ELALAAMDELVKLAQTDEPLWFRSLeggrEVLNHEEYMRIFTPCIGmkpsgFVSEASRETGMVIINGLALVETLMDSN-RWAEMFPcmia 410 5899**********************9*********999899**************************.******* PP EEEEEEEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTC CS START 78 kaetlevissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksng 160 + +t++vis+g g lqlm aelqalsplvp R++ f+R+++q+ +g+w++vdvS+d ++ + + +v +++lpSg+++++++ng Manes.01G261300.1.p 411 RTSTTDVISTGmggtrnGSLQLMHAELQALSPLVPvREVNFLRFCKQHAEGVWAVVDVSIDTIRETSGAPTFVNCRRLPSGCVVQDMPNG 500 *************************************************************999****************** PP EEEEEEEE-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS START 161 hskvtwvehvdlkgrlphwllrslvksglaegaktwvatlqrqcek 206 +skvtwveh+++++ ++h+l+r+l++sg+ +ga++wvatlqrqce+ Manes.01G261300.1.p 501 YSKVTWVEHAEYDETQIHQLYRPLISSGMGFGAQRWVATLQRQCEC 546 ******************************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	1.15E-20	101	173	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	2.3E-21	102	167	IPR009057	Homeodomain-like
PROSITE profile	PS50071	17.41	113	173	IPR001356	Homeobox domain
SMART	SM00389	1.7E-17	114	177	IPR001356	Homeobox domain
CDD	cd00086	2.02E-18	115	173	No hit	No description
Pfam	PF00046	2.2E-18	116	171	IPR001356	Homeobox domain
PROSITE pattern	PS00027	0	148	171	IPR017970	Homeobox, conserved site
PROSITE profile	PS50848	44.598	313	549	IPR002913	START domain
SuperFamily	SSF55961	6.04E-33	315	546	No hit	No description
CDD	cd08875	2.58E-127	317	545	No hit	No description
Pfam	PF01852	1.5E-56	322	546	IPR002913	START domain
SMART	SM00234	1.5E-48	322	546	IPR002913	START domain
SuperFamily	SSF55961	1.88E-23	567	745	No hit	No description
SuperFamily	SSF55961	1.88E-23	772	804	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0008289	Molecular Function	lipid binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 819 aa Download sequence Send to blast
MSFGGFLENG SPGGGGARIV ADIAYSSSSM PAGAIAQPRL ISHSLTKSMF NSPGLSLALQ 60 QPNIDGQGDV PRMVENFEPN GARRSREEEH ESRSGSDNLD GASGDDQDAA DNRPRKKRYH 120 RHTPQQIQEL EALFKECPHP DEKQRLELSR RLCLETRQVK FWFQNRRTQM KTQLERHENT 180 LLRQENDKLR AENMSIRDAM RNPICSNCGG PAIIGDISLE EQHLTIENAR LKEELDRVCA 240 LAGKFLGRPI SLLANSIGPP MPNSSLELGV GNNGFGCLSN AAATVPLGPD FSNALPVVTQ 300 TRPPTASMTG FDRSLERSMF LELALAAMDE LVKLAQTDEP LWFRSLEGGR EVLNHEEYMR 360 IFTPCIGMKP SGFVSEASRE TGMVIINGLA LVETLMDSNR WAEMFPCMIA RTSTTDVIST 420 GMGGTRNGSL QLMHAELQAL SPLVPVREVN FLRFCKQHAE GVWAVVDVSI DTIRETSGAP 480 TFVNCRRLPS GCVVQDMPNG YSKVTWVEHA EYDETQIHQL YRPLISSGMG FGAQRWVATL 540 QRQCECLAIL MSSTVPTRDH TAITSSGRRS MLKLAQRMTD NFCAGVCAST VHKWNKLNAG 600 NVDEDVRVMT RKSVDDPGEP PGIVLSAATS VWLPVSPQRL FDFLRDERLR SEWDILSNGG 660 PMQEMAHIAK GQDQGNCVSL LRASAMNANQ SSMLILQETC IDAAGSLVVY APVDIPAMHV 720 VMNGGDSAYV ALLPSGFAIV PDGPGSRGSP GTANDPTSNN GGGPGGQHRV SGSLLTVAFQ 780 ILVNSLPTAK LTVESVETVN NLISCTVQKI KAALQCES*

Sequence ? help Back to Top

Protein Sequence Length: 819 aa Download sequence Send to blast

MSFGGFLENG SPGGGGARIV ADIAYSSSSM PAGAIAQPRL ISHSLTKSMF NSPGLSLALQ  60
QPNIDGQGDV PRMVENFEPN GARRSREEEH ESRSGSDNLD GASGDDQDAA DNRPRKKRYH  120
RHTPQQIQEL EALFKECPHP DEKQRLELSR RLCLETRQVK FWFQNRRTQM KTQLERHENT  180
LLRQENDKLR AENMSIRDAM RNPICSNCGG PAIIGDISLE EQHLTIENAR LKEELDRVCA  240
LAGKFLGRPI SLLANSIGPP MPNSSLELGV GNNGFGCLSN AAATVPLGPD FSNALPVVTQ  300
TRPPTASMTG FDRSLERSMF LELALAAMDE LVKLAQTDEP LWFRSLEGGR EVLNHEEYMR  360
IFTPCIGMKP SGFVSEASRE TGMVIINGLA LVETLMDSNR WAEMFPCMIA RTSTTDVIST  420
GMGGTRNGSL QLMHAELQAL SPLVPVREVN FLRFCKQHAE GVWAVVDVSI DTIRETSGAP  480
TFVNCRRLPS GCVVQDMPNG YSKVTWVEHA EYDETQIHQL YRPLISSGMG FGAQRWVATL  540
QRQCECLAIL MSSTVPTRDH TAITSSGRRS MLKLAQRMTD NFCAGVCAST VHKWNKLNAG  600
NVDEDVRVMT RKSVDDPGEP PGIVLSAATS VWLPVSPQRL FDFLRDERLR SEWDILSNGG  660
PMQEMAHIAK GQDQGNCVSL LRASAMNANQ SSMLILQETC IDAAGSLVVY APVDIPAMHV  720
VMNGGDSAYV ALLPSGFAIV PDGPGSRGSP GTANDPTSNN GGGPGGQHRV SGSLLTVAFQ  780
ILVNSLPTAK LTVESVETVN NLISCTVQKI KAALQCES*

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in the regulation of the tissue-specific accumulation of anthocyanins and in cellular organization of the primary root. {ECO:0000269\|PubMed:10402424}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Manes.01G261300.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021613538.1	0.0	homeobox-leucine zipper protein ANTHOCYANINLESS 2-like
Swissprot	Q0WV12	0.0	ANL2_ARATH; Homeobox-leucine zipper protein ANTHOCYANINLESS 2
TrEMBL	A0A2C9WP55	0.0	A0A2C9WP55_MANES; Uncharacterized protein
STRING	cassava4.1_001772m	0.0	(Manihot esculenta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1192	34	106

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G00730.1	0.0	HD-ZIP family protein

Link Out ? help Back to Top
Phytozome	Manes.01G261300.1.p

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]