PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.01G262600.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family ARR-B
Protein Properties Length: 453aa    MW: 50815.1 Da    PI: 4.6779
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.01G262600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like742.1e-23207260155
              G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                          kp+l Wt+eLH+rF++a++ L G++ A Pk+il++m+v+gL  e++ SHLQkYRl
  Manes.01G262600.1.p 207 KPKLIWTNELHDRFLQAIRIL-GIDSAHPKKILKHMNVPGLKKENISSHLQKYRL 260
                          79*******************.********************************8 PP
2Response_reg523.9e-18241301107
                          EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHH CS
         Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedale 88 
                          +l+vd + + + +  ++l   gy +v +a+ +++al +l+e++   Dl+l+ + +p+md +ell+++ e +  lpi+v++a ++e+ +l 
  Manes.01G262600.1.p  24 ILVVDCDTTCLTIASKMLHTFGY-KVMTATRATDALSILQERQheLDLVLTEVHLPDMDKYELLETMGEIS-CLPIVVLSADNNENAMLG 111
                          89*********************.***************888878**********************9988.9***************** PP

                          HHHTTESEEEESS--HHHH CS
         Response_reg  89 alkaGakdflsKpfdpeel 107
                          +l  Ga  +l Kp+ ++++
  Manes.01G262600.1.p 112 CLFKGAVFYLLKPITMNDV 130
                          **************98875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.40.50.23005.8E-2615135No hitNo description
SuperFamilySSF521721.14E-2421134IPR011006CheY-like superfamily
SMARTSM004482.7E-1522134IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011030.30923138IPR001789Signal transduction response regulator, receiver domain
PfamPF000721.6E-1424131IPR001789Signal transduction response regulator, receiver domain
CDDcd001561.04E-1725135No hitNo description
PROSITE profilePS512949.607204263IPR017930Myb domain
SuperFamilySSF466895.38E-18205264IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.0E-24205264IPR009057Homeodomain-like
TIGRFAMsTIGR015571.4E-21207260IPR006447Myb domain, plants
PfamPF002495.8E-6212259IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 453 aa     Download sequence    Send to blast
MINPKVVSVD TRDNTEPGAT GISILVVDCD TTCLTIASKM LHTFGYKVMT ATRATDALSI  60
LQERQHELDL VLTEVHLPDM DKYELLETMG EISCLPIVVL SADNNENAML GCLFKGAVFY  120
LLKPITMNDV KSLWQFSYMK TPGEIAPSGG SKCFQEESPE NGSIEASECL SFSDAWEQIA  180
QKGKRKELED IDKDKGDDSV KSTVPKKPKL IWTNELHDRF LQAIRILGID SAHPKKILKH  240
MNVPGLKKEN ISSHLQKYRL SLKREQDAIQ KTMLRDYHLS SFNLQRENSQ FLKPQFLTTT  300
QPEISSHVQN LKNPDGTMCL ASLGCANYPM RDSSNQGYNS ISKSGEPVPQ NEHTYSTHTS  360
FSNVGIRINN EFGQMGNDNG EEFLMLSDEE NSRFENATDG MEFLGNWSEQ QQQFQEPPLS  420
PAPLRLEQEE GEDILWAERG TSDLFDSADW SA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A1e-17203264162ARR10-B
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.01G262600.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021613761.10.0two-component response regulator ARR14-like
TrEMBLA0A2C9WQJ90.0A0A2C9WQJ9_MANES; Uncharacterized protein
STRINGcassava4.1_028820m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF145541114
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G16110.11e-57response regulator 2