PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.01G265400.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family LBD
Protein Properties Length: 199aa    MW: 21835.9 Da    PI: 7.7701
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.01G265400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260124.55.5e-39161161100
               DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleq 89 
                          +C aCk+lrrkC k+C++apyf ++q +++fa+vhk+FGasn +kll ++p ++r da+ +l+yeA ar+rdPvyG+vg++++lqqq+ +
  Manes.01G265400.1.p  16 PCGACKFLRRKCLKGCIFAPYFDSDQgTAHFAAVHKVFGASNASKLLLRIPAHKRFDAVVTLCYEALARVRDPVYGCVGHLFTLQQQVVN 105
                          7***********************9989************************************************************** PP

               DUF260  90 lkaelallkee 100
                          l+aela+++++
  Manes.01G265400.1.p 106 LQAELAYIQAR 116
                          ******99875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089123.01715117IPR004883Lateral organ boundaries, LOB
PfamPF031951.0E-3716114IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 199 aa     Download sequence    Send to blast
MEREREMSSA NNGGGPCGAC KFLRRKCLKG CIFAPYFDSD QGTAHFAAVH KVFGASNASK  60
LLLRIPAHKR FDAVVTLCYE ALARVRDPVY GCVGHLFTLQ QQVVNLQAEL AYIQARLSTM  120
QSMPSVEAQA PPAQSISTSE MASNSIVSMH FDILQEVSTE FTSLCNPLDN KDDDLQALAR  180
DFVSRYLPGV RFRPPTSQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A4e-38121107104LOB family transfactor Ramosa2.1
5ly0_B4e-38121107104LOB family transfactor Ramosa2.1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.01G265400.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021630738.11e-147LOB domain-containing protein 19-like
SwissprotO813224e-72LBD31_ARATH; LOB domain-containing protein 31
TrEMBLA0A2C9WPF01e-146A0A2C9WPF0_MANES; Uncharacterized protein
STRINGcassava4.1_030486m1e-141(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17713493
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00210.12e-74LOB domain-containing protein 31