PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.01G272100.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family HD-ZIP
Protein Properties Length: 305aa    MW: 33575.8 Da    PI: 7.2239
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.01G272100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox56.74e-18137191256
                          T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
             Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                          rk+ +++keq   Le++F+++++++ +++ eLAk+l+L  rqV vWFqNrRa+ k
  Manes.01G272100.1.p 137 RKKLRLSKEQSLLLEDAFKEHNTLNPKQKLELAKQLNLRPRQVEVWFQNRRARTK 191
                          788899***********************************************98 PP
2HD-ZIP_I/II1253.3e-40137226191
          HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLree 90 
                          +kk+rlskeq+ lLE+ F+e+++L+p++K ela++L+l+prqv+vWFqnrRARtk+kq+E+d+e+Lkr++++l++en+rL+kev+eLr +
  Manes.01G272100.1.p 137 RKKLRLSKEQSLLLEDAFKEHNTLNPKQKLELAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCENLTQENRRLQKEVQELR-A 225
                          69*************************************************************************************9.5 PP

          HD-ZIP_I/II  91 l 91 
                          l
  Manes.01G272100.1.p 226 L 226
                          5 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF046181.9E-261104IPR006712HD-ZIP protein, N-terminal
SuperFamilySSF466891.0E-19122194IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.604.1E-19123192IPR009057Homeodomain-like
PROSITE profilePS5007117.637133193IPR001356Homeobox domain
SMARTSM003892.5E-16135197IPR001356Homeobox domain
PfamPF000461.6E-15137191IPR001356Homeobox domain
CDDcd000866.80E-16137194No hitNo description
PROSITE patternPS000270168191IPR017970Homeobox, conserved site
SMARTSM003406.8E-26193236IPR003106Leucine zipper, homeobox-associated
PfamPF021831.7E-11193227IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 305 aa     Download sequence    Send to blast
MAEKDDGLGL GLGLSLGSPA APQILPSLKL NLMSFPSELM QNNHSRTDLN DLFQACDRNA  60
DAWSFPRGID VNLIPSLADC DDEVGVSSPN STISSISGKR NEREQIGEET EAERASCSRG  120
DGGSDDEDVG AGGDASRKKL RLSKEQSLLL EDAFKEHNTL NPKQKLELAK QLNLRPRQVE  180
VWFQNRRART KLKQTEVDCE YLKRCCENLT QENRRLQKEV QELRALKLSP QQYMHMNPPT  240
TLTMCPSCER VAVSSSFSSV AATAASTAPC RPMGNPYTQR AMPSKPWAAL PIQQRPFGTP  300
ASRS*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1135141SRKKLRL
2185193RRARTKLKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.01G272100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021614834.10.0homeobox-leucine zipper protein HAT3-like
SwissprotP466021e-104HAT3_ARATH; Homeobox-leucine zipper protein HAT3
TrEMBLA0A2C9WQV60.0A0A2C9WQV6_MANES; Uncharacterized protein
STRINGcassava4.1_012590m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF123934105
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60390.13e-96homeobox-leucine zipper protein 3
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Zou LJ, et al.
    Role of Transcription Factor HAT1 in Modulating Arabidopsis thaliana Response to Cucumber mosaic virus.
    Plant Cell Physiol., 2016. 57(9): p. 1879-89
    [PMID:27328697]
  3. Caggiano MP, et al.
    Cell type boundaries organize plant development.
    Elife, 2018.
    [PMID:28895530]