PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.02G002400.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family bHLH
Protein Properties Length: 472aa    MW: 52273.8 Da    PI: 6.645
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.02G002400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH40.35.5e-13302347454
                          HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                  HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                          +h e+Er+RR+r+N++f  Lr+++P+       K++Ka+ L  Av YI+ L
  Manes.02G002400.1.p 302 NHVEAERQRRERLNHRFYALRSVVPNV-----SKMDKASLLADAVTYIQGL 347
                          699***********************6.....5****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142152.6E-4524204IPR025610Transcription factor MYC/MYB N-terminal
SuperFamilySSF474593.14E-18296364IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088817.199298347IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.25E-14301348No hitNo description
Gene3DG3DSA:4.10.280.102.8E-17302364IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.4E-10302347IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.9E-16304353IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 472 aa     Download sequence    Send to blast
MEEIMSPSSA SSLLSFCQES SPPLHQRLHV ILQSLPAWWL YAIFWQASND STGRIVLSWG  60
DGNFRGSKEF STEPSNKLNQ HKFSFNLERK MSKEFQVLFT DDMDMDRLAD ADGTNYGWFY  120
TASASRSFDV GEGIVGRTFG SGGFIWLIGD HRLQAYQCER VKEARMYGIR TLACVSTSCG  180
VVELGSSHMI HEDWSTVQLC KSLFGADVAC LISKNPSHEP QLQIPDRGAC SLDFGMSSGG  240
QIETSLDKQN EGYLKKDASG SGQGRSSSDS GPSDSEGNFA AGNNDGFRKR GRKPSGKEMP  300
LNHVEAERQR RERLNHRFYA LRSVVPNVSK MDKASLLADA VTYIQGLKGK VDELEAKLQA  360
VSQKSKITST VVYENPSTNC MVRPCSSYRD KAMEVDVNIV GSEAMIRVHS PDVNYPAARL  420
MNTLRELEIQ VHHASVSSIN EMVLQDVVIK VPQGFTSEEA IISAIYQRMQ N*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4rqw_A2e-24182043192Transcription factor MYC3
4rqw_B2e-24182043192Transcription factor MYC3
4rs9_A2e-24182043192Transcription factor MYC3
4yz6_A2e-24182043192Transcription factor MYC3
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1307312RQRRER
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.02G002400.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021605320.10.0transcription factor MYC2-like
TrEMBLA0A2C9WBW10.0A0A2C9WBW1_MANES; Uncharacterized protein
STRINGcassava4.1_027053m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF84134116
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00870.14e-57bHLH family protein