PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.02G005200.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family MYB
Protein Properties Length: 236aa    MW: 26476.8 Da    PI: 8.0095
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.02G005200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding25.53.2e-081443130
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHH CS
      Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIart 30
                         rg WT+ Ed+ll+++++ +G g+W++ +++
  Manes.02G005200.1.p 14 RGQWTPREDKLLINYIRAHGEGHWRSLPKK 43
                         89***********************99887 PP
2Myb_DNA-binding53.46.1e-174893148
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                         rg+ T++Ed+l+++++ +lG++ W++Ia +++ gRt++++k++w+++l
  Manes.02G005200.1.p 48 RGNITPDEDDLIIRLHSLLGNR-WSLIAGRLP-GRTDNEIKNYWNSHL 93
                         7999******************.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.1E-10543IPR009057Homeodomain-like
PROSITE profilePS500906.597942IPR017877Myb-like domain
SuperFamilySSF466894.03E-201189IPR009057Homeodomain-like
SMARTSM00717681345IPR001005SANT/Myb domain
PfamPF002493.0E-61443IPR001005SANT/Myb domain
PROSITE profilePS5129425.3734397IPR017930Myb domain
Gene3DG3DSA:1.10.10.606.3E-234498IPR009057Homeodomain-like
SMARTSM007174.6E-164795IPR001005SANT/Myb domain
PfamPF002492.0E-154893IPR001005SANT/Myb domain
CDDcd001671.04E-115293No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 236 aa     Download sequence    Send to blast
MGRAPCCSKV GLHRGQWTPR EDKLLINYIR AHGEGHWRSL PKKADIKRGN ITPDEDDLII  60
RLHSLLGNRW SLIAGRLPGR TDNEIKNYWN SHLSKRLNKT SGTRSSSSES KKKNKEGNKD  120
GANGKAAKSK IDLPKAIRVT SVSITRTSST SSLRGSSKTH AEVHNLPWLE MVCPNLEVRD  180
GIINDGETLP CNEDHDDLDM PTNENMLDEM FEEYEQLLRT DNYAQLDSFI DSLLA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-1412985109B-MYB
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.02G005200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021604250.11e-144transcription factor MYB15-like isoform X2
TrEMBLA0A2C9W9Y51e-172A0A2C9W9Y5_MANES; Uncharacterized protein
STRINGcassava4.1_034078m1e-143(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF3134817
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47460.16e-46myb domain protein 12