PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.02G010700.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family ERF
Protein Properties Length: 309aa    MW: 34347.4 Da    PI: 8.7542
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.02G010700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP262.87.6e-20106156256
                  AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                           y+GVr+++ +g+WvAeIr p +   r+r++lg+++tae Aa a+++a+ kl+ge
  Manes.02G010700.1.p 106 LYRGVRQRH-WGKWVAEIRLPQN---RTRVWLGTYDTAEAAAYAYDRAAYKLRGE 156
                          59******9.**********954...5**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.82E-17105165No hitNo description
Gene3DG3DSA:3.30.730.102.9E-31106164IPR001471AP2/ERF domain
PROSITE profilePS5103223.341106163IPR001471AP2/ERF domain
SuperFamilySSF541716.41E-23106164IPR016177DNA-binding domain
SMARTSM003803.8E-37106169IPR001471AP2/ERF domain
PfamPF008474.3E-14107156IPR001471AP2/ERF domain
PRINTSPR003671.6E-10107118IPR001471AP2/ERF domain
PRINTSPR003671.6E-10129145IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 309 aa     Download sequence    Send to blast
MQETNVPFGF TNAPDIGSSL SQLILAGGSN TLDSIFSHCL PESSISGPVF EPLGSSVYLR  60
QRDLLQKFCE ENRTNNNSSF SRNLLTNPIQ SSVRTSNYLA PSKKKLYRGV RQRHWGKWVA  120
EIRLPQNRTR VWLGTYDTAE AAAYAYDRAA YKLRGEYARL NFPNNKDPSK VGFTDCNRLN  180
ALKNSVDAKI QAICQKVKRE RAKKNAAKKN NVDANDSERD KMVKINSNSN SSSPSSSSLS  240
PIVFGDSWDG ELVSPTVSED GFWKYENSSP SVSTDCQIMK PEGMDFDGCS LARMPSFDPE  300
LIWEVLAN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-20102163163ATERF1
3gcc_A2e-20102163163ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.02G010700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021604440.10.0ethylene-responsive transcription factor ERF061
SwissprotQ9C7W21e-71ERF61_ARATH; Ethylene-responsive transcription factor ERF061
TrEMBLA0A2C9W9T50.0A0A2C9W9T5_MANES; Uncharacterized protein
STRINGcassava4.1_012438m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF71813148
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G64380.15e-58ERF family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]