PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.02G013200.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family ERF
Protein Properties Length: 336aa    MW: 37300.1 Da    PI: 5.0465
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.02G013200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.92.8e-19123173155
                  AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                          ++++GVr+++ +g+W+AeIrdp     r  r +lg+++taeeAa  +++a+ +l+g
  Manes.02G013200.1.p 123 KKFRGVRQRP-WGKWAAEIRDPL----RrVRLWLGTYDTAEEAAMVYDNAAIQLRG 173
                          59********.**********72....45*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.27E-32123180No hitNo description
SMARTSM003802.8E-36124187IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.0E-29124181IPR001471AP2/ERF domain
SuperFamilySSF541712.35E-21124181IPR016177DNA-binding domain
PROSITE profilePS5103223.341124181IPR001471AP2/ERF domain
PfamPF008472.0E-12124173IPR001471AP2/ERF domain
PRINTSPR003673.6E-10125136IPR001471AP2/ERF domain
PRINTSPR003673.6E-10147163IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 336 aa     Download sequence    Send to blast
MDQDCVMSMN PIKFSEHRNH TKLVRSFSNP TAEAKPPRVV RISVTDADAT DSSSDEEGEL  60
YRRQRMKKFV NEITIESSCS SESDSIWRSR SSRSSRPKCS AGKSGGCPVS LRPVKAAAPG  120
TGKKFRGVRQ RPWGKWAAEI RDPLRRVRLW LGTYDTAEEA AMVYDNAAIQ LRGPDALTNF  180
VTPPAKCSLP TKPAVSSSYN SGDESHNNNT ICSPTSVLRF PSSTSSNEEA ESQSGLCRKE  240
VREFKKESSL SENLSEFSEY SSINTCFPHD NFDFYSSMRD IFNEASMQNG FLEDDSEDMF  300
VDSSGDFGFG FSNWNVEDHF QDIGDLFGSD PLVAI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A3e-20122180362ATERF1
3gcc_A3e-20122180362ATERF1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.02G013200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021602470.10.0ethylene-responsive transcription factor CRF2-like
TrEMBLA0A2C9WA670.0A0A2C9WA67_MANES; Uncharacterized protein
STRINGcassava4.1_034110m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF45034161
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G23750.22e-54cytokinin response factor 2