PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.02G017100.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family WRKY
Protein Properties Length: 274aa    MW: 30712.5 Da    PI: 6.2451
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.02G017100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY101.55e-32115173259
                          --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                 WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                          +D ++WrKYGqK++kgs++prsYYrC+s  gC ++k+vers++dp+v++itY+geH h+
  Manes.02G017100.1.p 115 SDMWAWRKYGQKPIKGSPYPRSYYRCSSLkGCLARKQVERSSTDPSVFIITYTGEHSHP 173
                          79*************************998****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.803.2E-32100175IPR003657WRKY domain
PROSITE profilePS5081132.707109175IPR003657WRKY domain
SuperFamilySSF1182902.88E-27110175IPR003657WRKY domain
SMARTSM007744.3E-38114174IPR003657WRKY domain
PfamPF031062.2E-26116173IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 274 aa     Download sequence    Send to blast
MIIIQPNLDL DELFTFPEIF ESATDFNVKE EIYDSTYPVL HQHSLSTQSN PRVISSISEE  60
KEPENLQKKH PRPLAESASP ASRIGDATLV AKSKRSRKNH QKRVVKHVTS DGLSSDMWAW  120
RKYGQKPIKG SPYPRSYYRC SSLKGCLARK QVERSSTDPS VFIITYTGEH SHPHPTRRNS  180
LAGSTRIKSS MAKQAVANEP NMPPIKDACL DTVPSSMASI DQDKLVGDVK IRSDEEDQVL  240
EDSGSKEIVM PDVIFSDDLF PSLEDFEELL LDH*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5w3x_B9e-201151761780Disease resistance protein RRS1
5w3x_D9e-201151761780Disease resistance protein RRS1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.02G017100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKT8275871e-125KT827587.1 Manihot esculenta WRKY transcription factor 12 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021605595.10.0probable WRKY transcription factor 27, partial
TrEMBLA0A2C9WBJ90.0A0A2C9WBJ9_MANES; Uncharacterized protein
STRINGcassava4.1_028977m1e-155(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF62173150
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01250.13e-41WRKY family protein