PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.02G038400.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family GRAS
Protein Properties Length: 782aa    MW: 85598.9 Da    PI: 6.5458
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.02G038400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS325.97.7e-1004197802374
                 GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPil 91 
                           ++L+++Ae v +g+++ aq +Larl+++ sp g+p++R+a+yf+eAL+  l+   ++ + alpp++ ++ +++ ++ a+k+fsevsP++
  Manes.02G038400.1.p 419 LDQLYKAAELVGTGNFSHAQGILARLNQQLSPIGKPLHRAAFYFKEALQLLLLM-NNNPVTALPPRSPTPFDVIFKMGAYKVFSEVSPLI 507
                          679************************************************997.566666899999999******************** PP

                 GRAS  92 kfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvl 181
                          +f ++t+Nqa+lea++ ++r+HiiDfdi+ G+QW++++q+L  R++g+psl+iT+++sp++++  e+  ++e+L++fA+e+g++fe +v+
  Manes.02G038400.1.p 508 QFVNFTCNQALLEALSDADRIHIIDFDIGFGAQWASFMQELP-RNRGTPSLKITAFASPSTHHPVEVLLMRENLTQFANEIGISFELDVV 596
                          *****************************************6.789*******************************************9 PP

                 GRAS 182 vakrle..dleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfd 269
                            ++le  + +l+ +r +++Ea+aVn+ +   +  +++ +l+s    +L+++k+lsPk+vv  ++ +d+++ +F +++l+al+ y  l++
  Manes.02G038400.1.p 597 NFDSLEqnCYSLSIFRPNENEAVAVNFPI--WSSSNQPSALPS----LLRFIKQLSPKIVVSLDRGCDRTDLPFPQHILHALQSYIQLLE 680
                          6665541145666666677*******999..444445666666....******************************************* PP

                 GRAS 270 sleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslv 359
                          sl+a     s++ +k+E++ll+++i++ v  + ++     e++ +W+  + +aGF+p+++s+++++qa++++++++++g++ve++++ lv
  Manes.02G038400.1.p 681 SLDAV-NVSSDAVNKIEKFLLQPRIESTVLGRLRA----PEKMPSWKTIFASAGFSPLTFSNFTETQAEYVIKRTPVRGFHVEKRQALLV 765
                          **665.468899******************99998....9************************************************** PP

                 GRAS 360 lgWkdrpLvsvSaWr 374
                          l+W++r+L+s+SaWr
  Manes.02G038400.1.p 766 LCWQRRELISASAWR 780
                          **************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098545.281392760IPR005202Transcription factor GRAS
PfamPF035142.7E-97419780IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 782 aa     Download sequence    Send to blast
MSGMPFHLQG KGVVDIDIAG FASIYSPQET WKLKLQQHEV NSFASTEPTS VLHMRRSPSP  60
PTSASNLSSS FNCGGGGGGG NSTDNTTTTA TEKVVNPVNN ERKDEWATEL QPIPSGLEIV  120
STGERCGLGL EDWENMLSEP NQEQSLLRWI AGDVDESFGL RQLLQGGNNP PDFDGSGAVG  180
LGIVDQGPGF EAVSGIAGGV SGIGTNLSAF PASGFTTTNN NNNGNGKVAS GLVTPSSSSA  240
GLVSYRGVGL GSNTNSNCNI QNPIFASSAS SISLPATLPP GMLYPHNLQH QIEAPEEKPQ  300
ILNPQMLMNQ QQPHNPHPQN LSPFLPFSLP QQENHLLQPQ PKRHNSGGID PMSQMVSKLP  360
FSDPGHELLL RKQQQQQQLL GFPQGVQFLH PHLQQKPLVV KKEELGAHQQ QQQHQHALLD  420
QLYKAAELVG TGNFSHAQGI LARLNQQLSP IGKPLHRAAF YFKEALQLLL LMNNNPVTAL  480
PPRSPTPFDV IFKMGAYKVF SEVSPLIQFV NFTCNQALLE ALSDADRIHI IDFDIGFGAQ  540
WASFMQELPR NRGTPSLKIT AFASPSTHHP VEVLLMRENL TQFANEIGIS FELDVVNFDS  600
LEQNCYSLSI FRPNENEAVA VNFPIWSSSN QPSALPSLLR FIKQLSPKIV VSLDRGCDRT  660
DLPFPQHILH ALQSYIQLLE SLDAVNVSSD AVNKIEKFLL QPRIESTVLG RLRAPEKMPS  720
WKTIFASAGF SPLTFSNFTE TQAEYVIKRT PVRGFHVEKR QALLVLCWQR RELISASAWR  780
C*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A3e-334017793378Protein SCARECROW
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.02G038400.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM4052850.0KM405285.1 Jatropha curcas GRAS14 protein (GRAS14) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021604160.10.0scarecrow-like protein 27
TrEMBLA0A2C9WAR10.0A0A2C9WAR1_MANES; Uncharacterized protein
STRINGcassava4.1_002034m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF132692130
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00150.11e-122GRAS family protein