PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.02G042400.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family ERF
Protein Properties Length: 333aa    MW: 37061.3 Da    PI: 6.8928
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.02G042400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2667.4e-21188238255
                  AP2   2 gykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkkleg 55 
                          +y+GVr+++ +g+++AeIrdp   + k +r++lg+f+ta eAaka+++a+ kl+g
  Manes.02G042400.1.p 188 HYRGVRQRP-WGKYAAEIRDP---NqKGTRVWLGTFDTAIEAAKAYDRAAFKLRG 238
                          7********.**********9...5456*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.108.5E-33187247IPR001471AP2/ERF domain
PfamPF008471.6E-14188238IPR001471AP2/ERF domain
SuperFamilySSF541715.04E-23188247IPR016177DNA-binding domain
SMARTSM003801.3E-38188252IPR001471AP2/ERF domain
CDDcd000181.14E-31188246No hitNo description
PROSITE profilePS5103224.171188246IPR001471AP2/ERF domain
PRINTSPR003671.3E-13189200IPR001471AP2/ERF domain
PRINTSPR003671.3E-13228248IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000302Biological Processresponse to reactive oxygen species
GO:0001944Biological Processvasculature development
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009644Biological Processresponse to high light intensity
GO:0010200Biological Processresponse to chitin
GO:0051301Biological Processcell division
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 333 aa     Download sequence    Send to blast
MASETQVASA LELIRQHLLG DLLSPVPTSS SSSTATNSLT SLQHPSSHCS QNSSSDSAIS  60
VSDYFIHDDF FEFERKPQII DLITPKSSAP TTSFEFGSRS QLSDDFFDFE ANSQIPQSSE  120
IESTIDLFYF NIKPQIHPPD SGFQTSRKPS LKISLPNKTN WIGFVKPDQK PVSSNLGIAA  180
AAAEEKRHYR GVRQRPWGKY AAEIRDPNQK GTRVWLGTFD TAIEAAKAYD RAAFKLRGSK  240
AILNFPLEAG KLNTRADERN DIDSRTKEGN ERKRTRETEN VEREAKKMTR REETETAFWC  300
NGNLDLNGGF NVAPLSPLSS HPQLGYPQLM VI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A7e-29187247161ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00437DAPTransfer from AT4G17490Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.02G042400.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021604658.10.0ethylene-responsive transcription factor 6-like
TrEMBLA0A2C9WAP90.0A0A2C9WAP9_MANES; Uncharacterized protein
STRINGcassava4.1_032473m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF108534109
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17490.11e-70ethylene responsive element binding factor 6