PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.02G042500.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family ERF
Protein Properties Length: 340aa    MW: 37980.3 Da    PI: 6.0814
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.02G042500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2651.6e-20200250255
                  AP2   2 gykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkkleg 55 
                          +y+GVr+++ +g+++AeIrdp   + k  r++lg+f+ta eAaka+++a+ kl+g
  Manes.02G042500.1.p 200 HYRGVRQRP-WGKYAAEIRDP---NrKGSRVWLGTFDTAIEAAKAYDRAAFKLRG 250
                          7********.**********9...6566*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.101.2E-32199259IPR001471AP2/ERF domain
SuperFamilySSF541714.97E-23200259IPR016177DNA-binding domain
PROSITE profilePS5103224.25200258IPR001471AP2/ERF domain
PfamPF008472.0E-14200250IPR001471AP2/ERF domain
CDDcd000185.66E-32200258No hitNo description
SMARTSM003806.8E-38200264IPR001471AP2/ERF domain
PRINTSPR003671.3E-13201212IPR001471AP2/ERF domain
PRINTSPR003671.3E-13240260IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 340 aa     Download sequence    Send to blast
MATQSQVSSA LEIIKNHLLG DLLSPVRVSC SSSTSTSAST STTFLIDNVN TELWSSYSEP  60
DSSRASTSDS AFSIADYFRI NNIDDGFFEF EAKPQINDIA TTKSSDSTTH FEFHSQPQLF  120
SQSSNEFFDF ESKPQIVSQS NDDFFNLESE PRVPSVSSSS QINRKPSLKI SLPKKPEWIQ  180
FANPKPQPEQ RNLGVEEKRH YRGVRQRPWG KYAAEIRDPN RKGSRVWLGT FDTAIEAAKA  240
YDRAAFKLRG SKAILNFPLE AGKLNTCVND GNEGKRMRES EIVEGERKKV VKREEAEKDV  300
SLTMSSWTAV CDYGDLKEIM PLSPLSPHPS LGYPQLTVI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A7e-30199259161ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.02G042500.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021604656.10.0ethylene-responsive transcription factor 6-like
TrEMBLA0A2C9WDD10.0A0A2C9WDD1_MANES; Uncharacterized protein
STRINGcassava4.1_012714m1e-127(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF108534109
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17490.17e-51ethylene responsive element binding factor 6