PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.02G049200.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family ERF
Protein Properties Length: 407aa    MW: 44960.4 Da    PI: 4.3631
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.02G049200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.86.5e-194594255
                  AP2  2 gykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                         ++ GVr+++ +grWvAeI+d      ++ r++lg+f+taeeAa+a+++a+  l+g
  Manes.02G049200.1.p 45 RFVGVRQRP-SGRWVAEIKDtI----QKIRVWLGTFDTAEEAARAYDEAACLLRG 94
                         789******.7*********33....35**********************99987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000184.03E-3144101No hitNo description
SuperFamilySSF541713.6E-1945102IPR016177DNA-binding domain
PROSITE profilePS5103219.59945102IPR001471AP2/ERF domain
SMARTSM003801.2E-3645108IPR001471AP2/ERF domain
PfamPF008471.0E-134594IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.0E-2745101IPR001471AP2/ERF domain
PRINTSPR003675.9E-84657IPR001471AP2/ERF domain
PRINTSPR003675.9E-86884IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 407 aa     Download sequence    Send to blast
MGRKRKAVEA VEDKNSSEGA MAWDEMVKEA AEVAALGGVR RARKRFVGVR QRPSGRWVAE  60
IKDTIQKIRV WLGTFDTAEE AARAYDEAAC LLRGSNTRTN FWPCSPSSST TPALPSKITN  120
LLLQRLKARN NSCPPSASSS SLPNQQEQQQ VEEYRAETTD FSDTQFTDFL NDPEDYTTCN  180
DNIDSTSSRA IDYMTRSLES CLTEKEDSGG RELDFDSKWG DDISQSYSGD VNNLEAEGED  240
GGNDEGEESI GALDFHFVDD VGSDCYYSPF EIAAEIEEPV EPETLGDEPS MLRAAMKRMK  300
YERKFSASLY AFNGIPECLR LKLGSGNVKG RESSAQLTKL RDACNKNKEN EKKAKEDNME  360
VKGKNQEENS QNSIEMGSSA SSSSLSNDGE LSLWSSLDLP PICFVS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A8e-1338101771Ethylene-responsive transcription factor ERF096
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.02G049200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021603585.10.0ethylene-responsive transcription factor RAP2-11-like
TrEMBLA0A2C9WDA30.0A0A2C9WDA3_MANES; Uncharacterized protein
STRINGcassava4.1_008867m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF33383267
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G19790.14e-22related to AP2 11