PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.02G053200.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family C2H2
Protein Properties Length: 582aa    MW: 65417.5 Da    PI: 6.5444
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.02G053200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.40.0002281102223
                          EETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2   2 kCpdCgksFsrksnLkrHirtH 23 
                          +C  Cgk F  + +L+ H+r H
  Manes.02G053200.1.p  81 ECRVCGKQFEFPRSLHGHMRHH 102
                          7*******************99 PP
2zf-C2H219.82.1e-06111132223
                          EETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2   2 kCpdCgksFsrksnLkrHirtH 23 
                          +C+ Cgk F++  +L+ H+r+H
  Manes.02G053200.1.p 111 RCKECGKGFRTLRSLTGHMRLH 132
                          7*******************99 PP
3zf-C2H212.60.00041411433123
                          EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                          ++C +C+k+F++   L  H+  H
  Manes.02G053200.1.p 411 FQCRICNKMFPTYQALGGHQTFH 433
                          89************999999877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.02E-6534No hitNo description
Gene3DG3DSA:3.30.160.601.8E-4631IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.346936IPR007087Zinc finger, C2H2
PfamPF139121.1E-4931IPR007087Zinc finger, C2H2
SMARTSM003550.24931IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002801131IPR007087Zinc finger, C2H2
SMARTSM003550.3180102IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.84380107IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.603.3E-481106IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF139120.03581104IPR007087Zinc finger, C2H2
SuperFamilySSF576672.66E-1081132No hitNo description
PROSITE patternPS00028082102IPR007087Zinc finger, C2H2
SMARTSM003550.0011110132IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.946110137IPR007087Zinc finger, C2H2
PfamPF139124.3E-6111134IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.601.5E-6111135IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS000280112132IPR007087Zinc finger, C2H2
SuperFamilySSF576671.78E-8411433No hitNo description
PROSITE profilePS5015710.533411438IPR007087Zinc finger, C2H2
PfamPF139122.9E-7411434IPR007087Zinc finger, C2H2
SMARTSM003550.063411433IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280413433IPR007087Zinc finger, C2H2
SuperFamilySSF576671.78E-8492519No hitNo description
PfamPF139127.8E-10497521IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.263497525IPR007087Zinc finger, C2H2
SMARTSM003551497519IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280499520IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 582 aa     Download sequence    Send to blast
MEQDHEKKHV CKLCNKSFLS GRILGGHMRI HVARDSAKEE VKLENNNMGI EGYGLRENPK  60
KSWKSSGLKH TDGVSVQESL ECRVCGKQFE FPRSLHGHMR HHSAEERKGI RCKECGKGFR  120
TLRSLTGHMR LHSEKCKVPT ESITGSRPNL VVMTLSDTEP ASLVRRKRSN RKRYKVTPNS  180
SFSSLNESVS GFEVEEEVEE VALCLMMLSR GVCKWGEFKS IGEPLDNGSV PFEAKSLYHN  240
NRIGWRSEDG DYVLEDNELF KKKRPREQKL DPCASDSKNQ TSECSDCDSD IVCNVEKKIA  300
LEVPIENFYQ VAESMGPKLE DESRLLLCDA EIKKGIHDAT DSSATESESS QEFTAEIGLD  360
LAGLEYVKCT PSKRTTFKAC DAKVGKEFCT EMICSTSDFD LADDSKKKSQ FQCRICNKMF  420
PTYQALGGHQ TFHRATKSSV ASKIEQHQED IETNLLPDKT DLSSKLAKAE CVKDSGEEEE  480
ENGVTMTNYQ SKKSKEHKCH ICSKNFVSGQ ALGGHKRAHH AKAREELNLA MQQEDREMSD  540
APEINAPDML DTEANPEYGL ESWWAGVRNY KNESLVDLIA N*
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.02G053200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021603683.10.0zinc finger protein 197-like
TrEMBLA0A2C9WB620.0A0A2C9WB62_MANES; Uncharacterized protein
STRINGcassava4.1_004354m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF133592027
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G26610.17e-22C2H2-like zinc finger protein