PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.02G055900.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family TCP
Protein Properties Length: 362aa    MW: 39880.8 Da    PI: 9.455
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.02G055900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP102.95.5e-32491792124
                  TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec......eaesssssasns 85 
                           g+kdrhsk++T +g+RdRRvRls+++a++++dLqd+LG+ ++sk ++WLl++ak++i+el+ ++ ++ ++        ++s+++ as+s
  Manes.02G055900.1.p  49 FGGKDRHSKVCTIRGLRDRRVRLSVPTAIQLYDLQDRLGLNQPSKVVDWLLNAAKHEIDELPPLPMPPVNFGlnqqaiPTSSHEVGASQS 138
                          689*************************************************************66666444211112112222222222 PP

                  TCP  86 ssg......................kaaksaakskksqksaasalnlakesr.....akararare 124
                          +++                      +                         +     ak+++ ar+
  Manes.02G055900.1.p 139 NKEgfktnniinwkdpdeltrpnfwS-------------------------SdvllkAKSKEVARD 179
                          22222233333333333333333320.........................023333333333333 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5136931.46951109IPR017887Transcription factor TCP subgroup
PfamPF036341.2E-2951187IPR005333Transcription factor, TCP
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009965Biological Processleaf morphogenesis
GO:0030154Biological Processcell differentiation
GO:0031347Biological Processregulation of defense response
GO:0045962Biological Processpositive regulation of development, heterochronic
GO:0009507Cellular Componentchloroplast
Sequence ? help Back to Top
Protein Sequence    Length: 362 aa     Download sequence    Send to blast
MMITTSKEVD SPRKKEGDAS DGKITKASSS STPWLRLKDP RIVRVSRAFG GKDRHSKVCT  60
IRGLRDRRVR LSVPTAIQLY DLQDRLGLNQ PSKVVDWLLN AAKHEIDELP PLPMPPVNFG  120
LNQQAIPTSS HEVGASQSNK EGFKTNNIIN WKDPDELTRP NFWSSDVLLK AKSKEVARDS  180
IHEKENWIKR NDQEDGKESN EGPSSAHQIL SSSFFPKTSH SFLPGLTNNA TPYGSLFQSE  240
PPNFPLSHLG SRGFAAQTDD LHTLNAVPLP STLSLSSGSQ ILVCPPGTSQ PCFPSRVAAA  300
SAEIDPRQMN HFQMLNSSTQ NLFPNSLTPS PYLVNQSARP FHLSVTPRLF HSHTSGSHQP  360
E*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A6e-1856110155Putative transcription factor PCF6
5zkt_B6e-1856110155Putative transcription factor PCF6
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00326DAPTransfer from AT3G02150Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.02G055900.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021605684.10.0transcription factor TCP13-like
RefseqXP_021605685.10.0transcription factor TCP13-like
TrEMBLA0A2C9WCQ60.0A0A2C9WCQ6_MANES; Uncharacterized protein
STRINGcassava4.1_010816m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF93234119
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02150.13e-49plastid transcription factor 1