PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.02G058900.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family MYB
Protein Properties Length: 253aa    MW: 28980.6 Da    PI: 9.0484
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.02G058900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding62.39.6e-201360148
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                         +g+WT+eEd+ll ++vk++G g+W+++ar  g++R++k+c++rw +yl
  Manes.02G058900.1.p 13 KGPWTPEEDKLLSEYVKLHGEGRWTSVARGSGLNRSGKSCRLRWVNYL 60
                         79********************************************97 PP
2Myb_DNA-binding51.91.8e-1666110147
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                          rg  T++E+ +++++++++G++ W+tIar+++ gRt++++k++w+++
  Manes.02G058900.1.p  66 RGQITPQEEGIIIELHALWGNK-WSTIARYLP-GRTDNEIKNYWRTH 110
                          7888******************.*********.************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129424.998864IPR017930Myb domain
Gene3DG3DSA:1.20.1000.101.1E-4922No hitNo description
SuperFamilySSF466892.21E-3110107IPR009057Homeodomain-like
SMARTSM007173.1E-171262IPR001005SANT/Myb domain
PfamPF002492.6E-181360IPR001005SANT/Myb domain
CDDcd001673.50E-121560No hitNo description
Gene3DG3DSA:1.10.10.603.0E-232367IPR009057Homeodomain-like
PROSITE profilePS5129420.19565115IPR017930Myb domain
SMARTSM007175.2E-1465113IPR001005SANT/Myb domain
PfamPF002492.5E-1466110IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.4E-2468106IPR009057Homeodomain-like
CDDcd001671.19E-970111No hitNo description
Gene3DG3DSA:1.20.1000.101.1E-4107157No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009737Biological Processresponse to abscisic acid
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 253 aa     Download sequence    Send to blast
MMDWGVVQQG WRKGPWTPEE DKLLSEYVKL HGEGRWTSVA RGSGLNRSGK SCRLRWVNYL  60
RPGLKRGQIT PQEEGIIIEL HALWGNKWST IARYLPGRTD NEIKNYWRTH FKKREKSSSH  120
KQEKRKAQVL NKKLQLQQQQ EQQQQQQLGD DKMKAINFTS EGKIHEAQEK QEMAFMGPDL  180
ESQCLPVMYQ DIPSWADFMV EDGVLWGGLW NLDDQVDHAS NCSKIAKQNQ ATAFSFAGGS  240
DNTYSSAGGY IF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-25131147107B-MYB
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00388DAPTransfer from AT3G30210Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.02G058900.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021605692.10.0transcription factor WER
TrEMBLA0A2C9WBD70.0A0A2C9WBD7_MANES; Uncharacterized protein
STRINGcassava4.1_029259m1e-156(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF118234108
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G30210.12e-74myb domain protein 121