PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Manes.02G059100.1.p

Organism

Manihot esculenta

Taxonomic ID

3983

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot

Family

M-type_MADS

Protein Properties

Length: 105aa MW: 12240.2 Da PI: 10.3565

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Manes.02G059100.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	102.5	1.6e-32	9	59	1	51
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krienk+nrqvtf+kRrng+lKKA+ELSvLCdaeva+iifs++gklye+ss Manes.02G059100.1.p 9 KRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFSS 59 79***********************************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00432	5.1E-40	1	60	IPR002100	Transcription factor, MADS-box
PROSITE profile	PS50066	33.529	1	61	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	5.89E-31	2	76	IPR002100	Transcription factor, MADS-box
CDD	cd00265	4.24E-38	2	61	No hit	No description
PRINTS	PR00404	1.4E-33	3	23	IPR002100	Transcription factor, MADS-box
PROSITE pattern	PS00350	0	3	57	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	4.2E-27	10	57	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	1.4E-33	23	38	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	1.4E-33	38	59	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 105 aa Download sequence Send to blast
MGRGRVELKR IENKINRQVT FAKRRNGLLK KAYELSVLCD AEVALIIFSN RGKLYEFSSI 60 SKYESFLSFS LCLSFYTRTH ARVYEVLPCR WNPYNTSFNE AKRT*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5f28_A	1e-20	1	92	1	93	MEF2C
5f28_B	1e-20	1	92	1	93	MEF2C
5f28_C	1e-20	1	92	1	93	MEF2C
5f28_D	1e-20	1	92	1	93	MEF2C
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	MADS-box transcription factor that acts redundantly with EJ2 to control meristem maturation and inflorescence architecture. {ECO:0000269\|PubMed:28528644}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Manes.02G059100.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP006653	8e-66	AP006653.1 Lotus japonicus genomic DNA, chromosome 2, clone: LjT05M24, TM0338, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002525916.2	7e-35	developmental protein SEPALLATA 1
Refseq	XP_003549578.1	8e-35	MADS-box protein EJ2
Refseq	XP_012088064.1	8e-35	developmental protein SEPALLATA 1
Refseq	XP_021603660.1	9e-35	developmental protein SEPALLATA 1-like
Refseq	XP_021658036.1	8e-35	developmental protein SEPALLATA 1-like
Refseq	XP_021690779.1	8e-35	developmental protein SEPALLATA 1-like
Refseq	XP_022850778.1	3e-35	MADS-box protein EJ2-like
Refseq	XP_028208595.1	7e-35	MADS-box protein EJ2-like
Swissprot	K4DEK0	4e-34	J2_SOLLC; MADS-box protein J2
TrEMBL	A0A2C9WDL3	4e-70	A0A2C9WDL3_MANES; Uncharacterized protein
STRING	cassava4.1_025214m	4e-36	(Manihot esculenta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF119	33	360

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G24260.3	4e-36	MIKC_MADS family protein

Link Out ? help Back to Top
Phytozome	Manes.02G059100.1.p

Publications ? help Back to Top
Tomato Genome Consortium The tomato genome sequence provides insights into fleshy fruit evolution. Nature, 2012. 485(7400): p. 635-41 [PMID:22660326] Soyk S, et al. Bypassing Negative Epistasis on Yield in Tomato Imposed by a Domestication Gene. Cell, 2017. 169(6): p. 1142-1155.e12 [PMID:28528644]