PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.02G062700.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family CO-like
Protein Properties Length: 382aa    MW: 41653.3 Da    PI: 5.7913
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.02G062700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box186.2e-062060438
             zf-B_box  4 rkCpeHeekelqlfCedCqqllCedClleeHkg......Ht 38
                         r+C+++     + +C+ ++ +lC+ C    H        H+
  Manes.02G062700.1.p 20 RVCDTCRAAACTVYCRADSAYLCAGCDARVHAAnrvasrHE 60
                         79******99*****************99995555666676 PP
2zf-B_box29.51.5e-0962107342
             zf-B_box   3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42 
                           ++C+ +e+ ++ + C+ +   lC  C   +H+       H++vp+
  Manes.02G062700.1.p  62 VWVCEACERAPAAFLCKADAASLCTACDADIHSAnplarrHQRVPI 107
                          689*****************************66899999**9997 PP
3CCT70.34.7e-24312355144
                  CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                          Rea++lRY+eK+ktRkFeK+irY+sRKa+Ae+RpR+KGrF+k++
  Manes.02G062700.1.p 312 REARVLRYREKKKTRKFEKTIRYASRKAYAETRPRIKGRFAKRT 355
                          9*****************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003361.5E-81764IPR000315B-box-type zinc finger
PROSITE profilePS5011910.4241764IPR000315B-box-type zinc finger
CDDcd000211.83E-72064No hitNo description
PROSITE profilePS5011911.30560107IPR000315B-box-type zinc finger
PfamPF006431.4E-761107IPR000315B-box-type zinc finger
CDDcd000216.22E-963107No hitNo description
SMARTSM003361.8E-1065107IPR000315B-box-type zinc finger
PfamPF062037.4E-18312354IPR010402CCT domain
PROSITE profilePS5101716.648312354IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009658Biological Processchloroplast organization
GO:0009909Biological Processregulation of flower development
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0048576Biological Processpositive regulation of short-day photoperiodism, flowering
GO:0048579Biological Processnegative regulation of long-day photoperiodism, flowering
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 382 aa     Download sequence    Send to blast
MLKNENAGDG GGGASNNWAR VCDTCRAAAC TVYCRADSAY LCAGCDARVH AANRVASRHE  60
RVWVCEACER APAAFLCKAD AASLCTACDA DIHSANPLAR RHQRVPILPI SGCLYGPQVG  120
PATGETTEDM FMTQEGEEGV GEEEEDEAAS WLLLNTAKNS NGQNNNGFLF GGGEVDEYLD  180
LVEYNSNSCG DQNQYSDQNN LQHYSVPHQK SCYGGDSVVP VQCAEAAGKD QLHQQYHNFH  240
LGLEFESSSK AAYSYNGSIS HSVSISSMDV GVVPDSTMTE ASISHPRPPK GTIDLFSSPP  300
MPMPSQLSPR DREARVLRYR EKKKTRKFEK TIRYASRKAY AETRPRIKGR FAKRTDVEVE  360
VDQMFSTTLM AEAGYGIVPS F*
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor. Does not affect flowering time.
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.02G062700.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Expressed with a circadian rhythm showing a peak at dawn.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021598705.10.0zinc finger protein CONSTANS-LIKE 2
SwissprotQ965021e-142COL2_ARATH; Zinc finger protein CONSTANS-LIKE 2
TrEMBLA0A2C9WCX50.0A0A2C9WCX5_MANES; Uncharacterized protein
STRINGcassava4.1_009662m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF38273352
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02380.11e-107CONSTANS-like 2
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Simon S,Rühl M,de Montaigu A,Wötzel S,Coupland G
    Evolution of CONSTANS Regulation and Function after Gene Duplication Produced a Photoperiodic Flowering Switch in the Brassicaceae.
    Mol. Biol. Evol., 2015. 32(9): p. 2284-301
    [PMID:25972346]