PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.02G064100.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family MYB_related
Protein Properties Length: 102aa    MW: 11537.7 Da    PI: 4.1283
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.02G064100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding30.31e-091356344
                         SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHH CS
      Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrw 44
                         +WT e ++l+ da + + ++   +W+ Ia+ +g + t++++k+ +
  Manes.02G064100.1.p 13 NWTLEQHKLFEDALAIYDKDtpdRWSNIAKAVG-RTTEEEVKLQF 56
                         8********************************.99999999865 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007176.6E-71062IPR001005SANT/Myb domain
SuperFamilySSF466893.2E-101265IPR009057Homeodomain-like
CDDcd001671.38E-61356No hitNo description
PfamPF002494.7E-71356IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 102 aa     Download sequence    Send to blast
MASNASVQSQ NSNWTLEQHK LFEDALAIYD KDTPDRWSNI AKAVGRTTEE EVKLQFEILV  60
SDISDIESDK VPLPNYEDEG IIREETTTIN NEQKIRGILQ N*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A6e-26580277RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.02G064100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021605598.15e-65protein RADIALIS-like 6
SwissprotQ1A1731e-27RADL6_ARATH; Protein RADIALIS-like 6
TrEMBLA0A2C9WBD92e-67A0A2C9WBD9_MANES; Uncharacterized protein
STRINGcassava4.1_028792m3e-64(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15434280
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75250.25e-28RAD-like 6