PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.02G075900.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family GRAS
Protein Properties Length: 619aa    MW: 67228.7 Da    PI: 4.8195
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.02G075900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS458.34.6e-1402496111374
                 GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPi 90 
                          lv++Ll+cAeav+ ++l+la+al++++  la++++++m+++a+yf+eALa+r+++    +y    p+e  + + s++l +   f+e++P+
  Manes.02G075900.1.p 249 LVHTLLACAEAVQRENLKLAEALVKHIGLLAASQASSMRKVATYFAEALARRIYK----IY----PQECLDPSYSDTLEM--HFYETCPY 328
                          689****************************************************....44....333332235555555..5******* PP

                 GRAS  91 lkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnv 180
                          lkf+h+taNqaIlea+++++rvH+iDf+++qG+QWpaL+qaLa Rp+gpp +R+Tg+g+p+++++++l+++g++La++Ae++gv+fef+ 
  Manes.02G075900.1.p 329 LKFAHFTANQAILEAFATASRVHVIDFGLKQGMQWPALMQALALRPGGPPAFRLTGIGPPQPNNTDTLQQVGWKLAQLAETIGVEFEFRG 418
                          ****************************************************************************************** PP

                 GRAS 181 lvakrledleleeLrvkp..gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalf 268
                          +va++l+dl++e+L+++p   E++aVn+v++lhrll++++ +++    vL+ +k ++Pk+v++veqea+hn++ F++rf+eal+yys+lf
  Manes.02G075900.1.p 419 FVANSLADLQPEMLDLRPpeVETVAVNSVFELHRLLARPGGIDK----VLSSIKAMKPKIVTIVEQEANHNGSVFVDRFTEALHYYSSLF 504
                          ******************9999**************99998888....****************************************** PP

                 GRAS 269 dsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgs 357
                          dsle +  +  +++ ++++ +lgr+i+nvvacega+r+erhetl++Wr r+e+aGF pv+l+++a kqa++ll+ ++ +dgyrvee++g+
  Manes.02G075900.1.p 505 DSLEGSGLAVPSQDLVMSELYLGRQICNVVACEGADRVERHETLSHWRTRIESAGFDPVHLGSNAFKQASMLLALFAgGDGYRVEENNGC 594
                          ***7775566688999999*********************************************************************** PP

                 GRAS 358 lvlgWkdrpLvsvSaWr 374
                          l+lgW++rpL+++SaW+
  Manes.02G075900.1.p 595 LMLGWHTRPLIATSAWK 611
                          ****************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM011294.1E-3650123No hitNo description
PfamPF120414.4E-3750115IPR021914Transcriptional factor DELLA, N-terminal
PROSITE profilePS5098568.548223590IPR005202Transcription factor GRAS
PfamPF035141.6E-137249611IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009723Biological Processresponse to ethylene
GO:0009737Biological Processresponse to abscisic acid
GO:0009739Biological Processresponse to gibberellin
GO:0009863Biological Processsalicylic acid mediated signaling pathway
GO:0009867Biological Processjasmonic acid mediated signaling pathway
GO:0010187Biological Processnegative regulation of seed germination
GO:0042538Biological Processhyperosmotic salinity response
GO:2000033Biological Processregulation of seed dormancy process
GO:2000377Biological Processregulation of reactive oxygen species metabolic process
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 619 aa     Download sequence    Send to blast
MKRDRPESCS AAGCGIAGYD ANYAENKGES SSSMGKGKLW EEDQDPGGMD ELLAVLGYKV  60
RSSDMADIAQ KLEQLEMVMG TAQEDGISHL CSDTVHYNPS DLSGWVQSIL SEFNVPIGLD  120
ASGMLQNQHD SVFGSSTITF SNPQLHPSGI FSDDSEYDLR AIPGMAAYPQ PDSLSEREIS  180
RKRMKTSPDT DTGNNTNSNS NPTPPLLADA ASSSFSSSSP PSTITVSGNL SEPTRPVVLI  240
DSQETGVRLV HTLLACAEAV QRENLKLAEA LVKHIGLLAA SQASSMRKVA TYFAEALARR  300
IYKIYPQECL DPSYSDTLEM HFYETCPYLK FAHFTANQAI LEAFATASRV HVIDFGLKQG  360
MQWPALMQAL ALRPGGPPAF RLTGIGPPQP NNTDTLQQVG WKLAQLAETI GVEFEFRGFV  420
ANSLADLQPE MLDLRPPEVE TVAVNSVFEL HRLLARPGGI DKVLSSIKAM KPKIVTIVEQ  480
EANHNGSVFV DRFTEALHYY SSLFDSLEGS GLAVPSQDLV MSELYLGRQI CNVVACEGAD  540
RVERHETLSH WRTRIESAGF DPVHLGSNAF KQASMLLALF AGGDGYRVEE NNGCLMLGWH  600
TRPLIATSAW KLGGGSQE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A3e-6825661026378Protein SCARECROW
5b3h_A3e-6825661025377Protein SCARECROW
5b3h_D3e-6825661025377Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional regulator that acts as a repressor of the gibberellin (GA) signaling pathway. Probably acts by participating in large multiprotein complexes that represses transcription of GA-inducible genes. Upon GA application, it is degraded by the proteasome, allowing the GA signaling pathway (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.02G075900.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKT6964390.0KT696439.1 Hevea brasiliensis DELLA protein GAI (GAI) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021604200.10.0DELLA protein GAI-like
SwissprotQ84TQ70.0GAI_GOSHI; DELLA protein GAI
TrEMBLA0A2C9WBU80.0A0A2C9WBU8_MANES; Uncharacterized protein
STRINGcassava4.1_003741m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF80334121
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G03450.10.0RGA-like 2