PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.02G099500.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family GATA
Protein Properties Length: 369aa    MW: 39962.7 Da    PI: 6.4215
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.02G099500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA57.61.6e-18285319135
                 GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                          Cs+Cg+ kTp+WR gp g ktLCnaCG++y++ +l
  Manes.02G099500.1.p 285 CSHCGVQKTPQWRTGPLGAKTLCNACGVRYKSGRL 319
                          *******************************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004016.0E-16279333IPR000679Zinc finger, GATA-type
PROSITE profilePS5011412.057279315IPR000679Zinc finger, GATA-type
SuperFamilySSF577164.23E-14279340No hitNo description
Gene3DG3DSA:3.30.50.101.2E-14283317IPR013088Zinc finger, NHR/GATA-type
CDDcd002021.24E-14284333No hitNo description
PROSITE patternPS003440285310IPR000679Zinc finger, GATA-type
PfamPF003202.1E-16285319IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 369 aa     Download sequence    Send to blast
MLYQTHHPFI LPATTSFVSS SSSHLQLQTQ MDSVEGALKT SVRKEMAFKF SPQPFFDDLW  60
ALNAQNCASS DDSIVDELLD FSNEAGFVEE EGGEGKASAV SASPKETAFE DDKISEQSSI  120
LSVQEDFGSV PASELGVPQE DLASLEWLSH FVEDSNSEYS TPFPAGISSE KPTKDSASEL  180
QKPVLTEPCF KTPVPAKARS KRARNCMRVW PLGSPSLTES SSSSSSSSSV SYPSSTCLVL  240
TTTAVNHEPT EPVCFEGPPA KKQKKRAAGE LRSRVSSGSQ PPRRCSHCGV QKTPQWRTGP  300
LGAKTLCNAC GVRYKSGRLL PEYRPACSPT FSGELHSNHH RKVLEMRKKK ELLGQSEPDS  360
APPIVPSF*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.02G099500.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021602140.10.0GATA transcription factor 5
SwissprotQ9FH572e-85GATA5_ARATH; GATA transcription factor 5
TrEMBLA0A2C9WE170.0A0A2C9WE17_MANES; GATA transcription factor
STRINGcassava4.1_011886m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF110834107
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66320.26e-85GATA transcription factor 5