PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.02G101200.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family C3H
Protein Properties Length: 1553aa    MW: 170216 Da    PI: 5.6947
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.02G101200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH17.28.9e-0615281551226
                           -S---SGGGGTS--TTTTT-SS-SS CS
              zf-CCCH    2 ktelCrffartGtCkyGdrCkFaHg 26  
                           +++ C+ f+++G+Ck G++C++ H+
  Manes.02G101200.1.p 1528 GQRVCK-FYESGYCKKGASCSYWHP 1551
                           6799**.8899***********997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF579031.26E-891166IPR011011Zinc finger, FYVE/PHD-type
Gene3DG3DSA:3.30.40.103.7E-8115174IPR013083Zinc finger, RING/FYVE/PHD-type
PROSITE profilePS500168.582119185IPR019787Zinc finger, PHD-finger
SMARTSM002494.9E-7121167IPR001965Zinc finger, PHD-type
CDDcd155689.71E-19121166No hitNo description
PROSITE patternPS013590122182IPR019786Zinc finger, PHD-type, conserved site
Gene3DG3DSA:1.10.245.105.5E-23353435IPR003121SWIB/MDM2 domain
SuperFamilySSF475923.92E-20353430IPR003121SWIB/MDM2 domain
SMARTSM001510.0037355434IPR019835SWIB domain
PfamPF022019.1E-13359429IPR003121SWIB/MDM2 domain
PROSITE profilePS5136025.692485618IPR004343Plus-3 domain
SMARTSM007193.0E-45485595IPR004343Plus-3 domain
SuperFamilySSF1590421.44E-31486615IPR004343Plus-3 domain
PfamPF031264.3E-22490592IPR004343Plus-3 domain
SuperFamilySSF552773.14E-15826881IPR003169GYF domain
CDDcd000722.17E-13829882No hitNo description
PROSITE profilePS5082913.881829883IPR003169GYF domain
SMARTSM004441.3E-14830885IPR003169GYF domain
Gene3DG3DSA:3.30.1490.408.6E-16831882IPR003169GYF domain
PfamPF022131.2E-10832875IPR003169GYF domain
PROSITE profilePS5010313.74215261552IPR000571Zinc finger, CCCH-type
SMARTSM003560.004515261552IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.18E-615271551IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 1553 aa     Download sequence    Send to blast
MEPQQQQQQR KQEVEECRPS IQEDKEQRGF DNSLRGADIM TIDQCETIRE MDDSQLVGPS  60
PAVAVVTRDV NMVDVQVATV EKVAVAATST AKRKRGRPPR IQGKTGPQPP ALKKNEDEED  120
VCFICFDGGS LVLCDRRGCP KAYHPACIKR DEAFFRSKAK WNCGWHICSS CQKASHYMCY  180
TCTYSLCKGC TKDADYVCVR GNKGLCGTCM RIIMLIENIS PANTEMVQVD FDDKTSWEYL  240
FKVYWVYLKA KLSLTIDELT KAKNPWKGDE LPKTRNSWKG ACTGFSKEAS SVEIYHGNND  300
KGSCLDSCYE NVEANHSKRR KTKDENKVLN EINSPLMEKS DVGKIATLPE GTTWATKELL  360
EFVAHMKNGD TSILSQFDVQ GLLLEYVKRN NLRDPHQKSQ IVCDSRLITL FGKPLVGHFE  420
MLKLLEYHFL IKEKSPVDDA DGGQLEAAGS NDSQPIVSND RRRKIRKKMD ERGPLINPNP  480
DEYAAIDVHN INLLYLKRNL VENLMDDFEK FHEKVVGSFV RIRISGGDQK QDMYRLVQVV  540
GTSKAAESYE VGTRTTNIML EILNLEKKEV ISIDGISSQE FSEDECRRLR QCVKCGLIKR  600
LKVGEIQEKT MALQHVKVSD WLEAEISRLN HLRDRASEKG LRKELRECVE KLELLKSPKE  660
RERRLHEIPN IHLDPNMDPS VESEDAGESD EKKQGYHVRS RLSSDGRKGV ELNSSPREVD  720
EIAVGDSAEK DLAPACERNK RICTFFVDRD GTTRVCKRVG EGESTWSHDG GAFGRNNHDT  780
SRNQLDATGL ASSDWNGRAL VQSESLPGVV IPSPLCSGRE HSASDIETEK LWHYEDPFGK  840
HQGPFSMIQL RKWNASGLFP PDFRVWRIDE KQDDSILLTE ALVGQLPEEP PQHCNSTLLP  900
QEATVASNDA VKKWEDGLSQ SSHVTWIDGK GVDHDKKPVQ NGDNDLVRCN ELGSHSSTWT  960
KAVDVAITND APAKNSLQSW DLPQEGKSWV GTSPSSSGKL FESLSLQARE GHGDEKLSSN  1020
PCHADENSYR SSVQTSTRGR DEKCKLADNE GYSSQSSGHN WGPQPISSSS SGRDSNSIFV  1080
SAAKSPEKSE QNQKVGLSDL PSPTAKHGDG ELKGQATDNK LSVGSDVPVQ DSGPSWSTAS  1140
SLVVGGGQLC EVAGDWGGYS CSLAKPFVES NLVNASSLKP TEGVGDHAAT PTSASGQLMH  1200
SSPHHPTIDT SAWQPIVPEP NEFCSLVDES VSDLLAEVEA MESLGGLPSP TSKMSCGGEL  1260
TPGSDDDCFS PVEPFSPAPD QGRSDALSST SDVQIPSQLT ASNMPPHSVA PDEPLRASPM  1320
PSQSTVTEEP LGLWQTDVLN PQNSFSGHSS SSAEVEGDAK PSDVSVNQWE TRSDLEPLAS  1380
SAVNQGEAGS NIWAPTPSAV RQLEAGSDTQ HSASSTADAS SGTVKGKGNL NRVEPQGSAG  1440
MAWGTGHGSA QQQANSNPAI STNNVGSWGS QPRNGGDNRY SGTRDHRNHY SQGRDSGYVR  1500
DRSSWNRQST YGFGGGGGGG SFKPQGKGQR VCKFYESGYC KKGASCSYWH PS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4gnd_A1e-121191881581Histone-lysine N-methyltransferase NSD3
4gnd_C1e-121191881581Histone-lysine N-methyltransferase NSD3
4gne_A1e-121191881581Histone-lysine N-methyltransferase NSD3
4gnf_A1e-121191881581Histone-lysine N-methyltransferase NSD3
4gng_A1e-121191881581Histone-lysine N-methyltransferase NSD3
4gng_D1e-121191881581Histone-lysine N-methyltransferase NSD3
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.02G101200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX5769501e-39JX576950.1 Gossypium hirsutum clone NBRI_GE8679 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021604768.10.0zinc finger CCCH domain-containing protein 44-like
SwissprotQ9SD340.0C3H44_ARATH; Zinc finger CCCH domain-containing protein 44
TrEMBLA0A251LGN70.0A0A251LGN7_MANES; Uncharacterized protein
STRINGXP_002533810.10.0(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF14351523
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G51120.10.0DNA binding;zinc ion binding;nucleic acid binding;nucleic acid binding