PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.02G113100.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family C2H2
Protein Properties Length: 221aa    MW: 22315.3 Da    PI: 6.9487
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.02G113100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.40.000247798223
                         EETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2  2 kCpdCgksFsrksnLkrHirtH 23
                         +C  Cgk F ++     H+r H
  Manes.02G113100.1.p 77 VCALCGKKFGSWKGVFGHMRAH 98
                         6*******************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE patternPS0002807898IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 221 aa     Download sequence    Send to blast
MADSPPPPPV PSSSSSSSTT PPSTVQVGPG GSSVGGGSGE GSSQKKRTGG NNNQGGEEGG  60
PKRKKRGEID TPVSEPVCAL CGKKFGSWKG VFGHMRAHPE RDWRGAFPPP KGASATMRIS  120
NPEIQQQLAS TLFALGSETL AKMRQDSITT HGGAGAGAGA SSSRAGEIDL NREPREHAGP  180
PSSTTPASTN PPPQGGGSGF DLNLPPPPEN ADEEDDSKNA *
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
14465KKRTGGNNNQGGEEGGPKRKKR
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.02G113100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021676667.11e-61uncharacterized protein LOC110662098
TrEMBLA0A2C9WCW91e-154A0A2C9WCW9_MANES; Uncharacterized protein
STRINGcassava4.1_022775m1e-154(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF102022128
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G35610.11e-13C2H2 family protein