PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.02G113200.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family C2H2
Protein Properties Length: 260aa    MW: 27770.4 Da    PI: 4.8043
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.02G113200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.42.6e-05123144223
                          EETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2   2 kCpdCgksFsrksnLkrHirtH 23 
                          +C  C ++F++ ++L  H+r+H
  Manes.02G113200.1.p 123 VCAVCRRRFPSYYSLFGHLRSH 144
                          6********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE patternPS000280124144IPR007087Zinc finger, C2H2
PfamPF139121.2E-7124145IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 260 aa     Download sequence    Send to blast
MDNQKDHSDQ PEKSSTQQPQ NGVDENVDAG SLPSNVGPVS RAEVPPIPAV TIQTARIVPP  60
SFYTTPPPAA GGGGGVTAGA SGSREGSRAK KGRSFDPRAS SSGGLFFRFL KPKRRIDARA  120
PPVCAVCRRR FPSYYSLFGH LRSHDKREWG GAFPPPRYNP DWVRRGGDDA DQQEPPAANQ  180
IVIEQEVIPA LLGAAQETLA RMNQDAQIAP REFDLNVHPQ DEAGPSSAGN AETTGLDLNF  240
PPPKEEEEGN DDDEDAPAA*
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.02G113200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021603774.10.0uncharacterized protein LOC110608789
TrEMBLA0A2C9WCX80.0A0A2C9WCX8_MANES; Uncharacterized protein
STRINGcassava4.1_014273m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2696933
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G35700.19e-10C2H2 family protein