PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Manes.02G114200.1.p

Organism

Manihot esculenta

Taxonomic ID

3983

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot

Family

WOX

Protein Properties

Length: 258aa MW: 29154.3 Da PI: 5.86

Description

WOX family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Manes.02G114200.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	67.8	1.4e-21	106	166	2	57
T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 r+R+t+t+ ql++Le+ F + n +ps+++++e++++l +++e++V++WFqNrRa+ k+ Manes.02G114200.1.p 106 RQRWTPTPVQLQILERIFDQgNGTPSKQKIKEITSELsqhgQISETNVYNWFQNRRARSKR 166 89***************99************************************97 PP
2	Wus_type_Homeobox	102.1	3.9e-33	105	168	2	65
Wus_type_Homeobox 2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 ar+RWtPtp Q++iLe+++++G tP+k++i++it+eL+++G+i+++NV++WFQNr+aR+++kq Manes.02G114200.1.p 105 ARQRWTPTPVQLQILERIFDQGNGTPSKQKIKEITSELSQHGQISETNVYNWFQNRRARSKRKQ 168 789***********************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	3.4E-18	100	171	IPR009057	Homeodomain-like
PROSITE profile	PS50071	15.175	102	167	IPR001356	Homeobox domain
SMART	SM00389	6.2E-15	104	171	IPR001356	Homeobox domain
SuperFamily	SSF46689	9.84E-19	105	168	IPR009057	Homeodomain-like
CDD	cd00086	3.99E-14	106	168	No hit	No description
Pfam	PF00046	2.1E-19	106	166	IPR001356	Homeobox domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 258 aa Download sequence Send to blast
MMEWENNQEN QQQHQENQNQ RENRNGNNMS NVNGNNGNGG MLYVKVMTDE QLETLRKQIA 60 VYATICEQLV EMHKTLSAQQ DLAGGRLGNL YCDPLMASGG HKITARQRWT PTPVQLQILE 120 RIFDQGNGTP SKQKIKEITS ELSQHGQISE TNVYNWFQNR RARSKRKQLV ASSNNAESEV 180 ETEVDSLNEK KTKPEIFHSQ QNPPRADDLC FQSPEISSEL HFLGVLPNHR DDHLTGKLAV 240 PGGYNLYDQA EDYGMAG*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	159	167	RRARSKRKQ

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor which may be involved in developmental processes. {ECO:0000250}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00617	PBM	Transfer from AT4G35550	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Manes.02G114200.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021605528.1	0.0	WUSCHEL-related homeobox 13 isoform X1
Swissprot	O81788	1e-110	WOX13_ARATH; WUSCHEL-related homeobox 13
TrEMBL	A0A2C9WCZ0	0.0	A0A2C9WCZ0_MANES; Uncharacterized protein
STRING	cassava4.1_014347m	0.0	(Manihot esculenta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1855	34	93

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G35550.1	1e-110	WUSCHEL related homeobox 13

Link Out ? help Back to Top
Phytozome	Manes.02G114200.1.p

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Dolzblasz A, et al. Stem Cell Regulation by Arabidopsis WOX Genes. Mol Plant, 2016. 9(7): p. 1028-39 [PMID:27109605]