PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.02G118800.2.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family C3H
Protein Properties Length: 694aa    MW: 74951.9 Da    PI: 5.3073
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.02G118800.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH19.71.5e-06263283526
                          --SGGGGTS--TTTTT-SS-SS CS
              zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                          +C+ f++ G C+ Gd C +aHg
  Manes.02G118800.2.p 263 PCPEFRK-GSCRQGDACEYAHG 283
                          8******.*************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF484031.49E-1558137IPR020683Ankyrin repeat-containing domain
Gene3DG3DSA:1.25.40.202.5E-1659138IPR020683Ankyrin repeat-containing domain
SMARTSM002480.00135989IPR002110Ankyrin repeat
PROSITE profilePS5029717.05159129IPR020683Ankyrin repeat-containing domain
PfamPF127967.7E-1059128IPR020683Ankyrin repeat-containing domain
PROSITE profilePS500888.6035983IPR002110Ankyrin repeat
CDDcd002041.68E-1461134No hitNo description
PROSITE profilePS5008812.63694129IPR002110Ankyrin repeat
SMARTSM002483.8E-494126IPR002110Ankyrin repeat
SMARTSM003561.0E-4258284IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.662263285IPR000571Zinc finger, CCCH-type
SMARTSM0035652293316IPR000571Zinc finger, CCCH-type
PROSITE profilePS501036.118293317IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 694 aa     Download sequence    Send to blast
MENEFQKRDG FFCDLSVLLE LSASNDLIGF KREIEGGRDI DERGLWYGRR IGSKRMGFEE  60
RTPLMIAALY GSKDVLNYIL EMGCVDVNRS CGSDGATALH CAAAGGSASS LEVVKLLLDA  120
SADPNTVDAD GNHASDLLVP FVGSDSNSRG KALELVLKGG CANDESCVVV DQNPNEMDGQ  180
DKQEVSTPIL SKDGTEKKEY PVDVTLPDIK NGIYGTDEFR MYTFKVKPCS RAYSHDWTEC  240
PFVHPGENAR RRDPRKYHYS CVPCPEFRKG SCRQGDACEY AHGIFECWLH PAQYRTRLCK  300
DEINCTRRVC FFAHKPEELR PLYASTGSAV PSPRSFSANG SALDIGSVSP LALGSPAVLI  360
PATSTPPLTP SGSSSPMGGW PNQSNIVPPT LHLPGSRLKS ALCARDMDLD MELLGLDNHH  420
RWQQQLMDEI SGLSSPSNWN NGLSTGSAFA VSGDRTAELN RIGGVKPTNL EDIFGSLDPS  480
ILPQLQGLSV DASASQLQSP TGIQMHQNIN QKLRSGYPTN FSSSPVRTSS FGIDPSGAAA  540
AAAAVLNSRA AAFAKRSQSF IERSAVNRHP GFSSPTSSAT VMPSNISDWG SPDGKLDWGI  600
QGEELNKLRK SASFGIRSNA SSLAAAAVSL PATLDEPDVS WVQSLVKDTS PLKSGHLGFE  660
EQQQQQCHTN TGSSEMLPAW MEQLYIEQEQ MVA*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00566DAPTransfer from AT5G58620Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.02G118800.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021604126.10.0zinc finger CCCH domain-containing protein 66-like
RefseqXP_021604127.10.0zinc finger CCCH domain-containing protein 66-like
SwissprotQ9LUZ40.0C3H66_ARATH; Zinc finger CCCH domain-containing protein 66
TrEMBLA0A2C9WD670.0A0A2C9WD67_MANES; Uncharacterized protein
STRINGcassava4.1_002672m0.0(Manihot esculenta)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58620.10.0C3H family protein