PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.02G128400.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family C2H2
Protein Properties Length: 165aa    MW: 19073.6 Da    PI: 8.6304
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.02G128400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.42.7e-052042123
                         EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                         y C+ Cg+ F+++  L  H+++H
  Manes.02G128400.1.p 20 YFCNFCGREFRSSQALGGHMNVH 42
                         78*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.11E-71747No hitNo description
Gene3DG3DSA:3.30.160.606.2E-51844IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015711.9462047IPR007087Zinc finger, C2H2
SMARTSM003550.00632042IPR015880Zinc finger, C2H2-like
PfamPF139121.2E-52243IPR007087Zinc finger, C2H2
PROSITE patternPS0002802242IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 165 aa     Download sequence    Send to blast
MEAARCWEEE EASVWPPRSY FCNFCGREFR SSQALGGHMN VHRRDRARLK QSPDFQNDFL  60
HHQHQNLHEI TLLHNPNSRV FVSPAGVSFP VMTRDKKCHK PDISMNPAEL KRENVSCKRQ  120
RSDELLSPKS TSMKKNHLQA EFKRLCEDAT QGLDLELRLG FSLI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1njq_A2e-111542229superman protein
2l1o_A2e-111542229Transcriptional regulator SUPERMAN
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.02G128400.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021598278.11e-121transcriptional regulator SUPERMAN-like
TrEMBLA0A2C9WDC91e-119A0A2C9WDC9_MANES; Uncharacterized protein
STRINGcassava4.1_026421m1e-120(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF35253155
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37740.18e-21zinc-finger protein 10