PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.02G128500.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family C2H2
Protein Properties Length: 190aa    MW: 20932.1 Da    PI: 6.5135
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.02G128500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.97.8e-052749123
                         EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                         y+C+ C++ Fs+   L  H++ H
  Manes.02G128500.1.p 27 YECNFCKRGFSNAQALGGHMNIH 49
                         99*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.602.6E-52553IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576675.87E-72554No hitNo description
PROSITE profilePS5015711.6142754IPR007087Zinc finger, C2H2
PROSITE patternPS0002802949IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0051973Biological Processpositive regulation of telomerase activity
GO:0003676Molecular Functionnucleic acid binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 190 aa     Download sequence    Send to blast
METEQSNQEN PDNMNTEEQG SSQVRSYECN FCKRGFSNAQ ALGGHMNIHR KDKAKLKHPS  60
SNDLQQSPDI PKILSSSFSS PIPTSMIHPL MQPKSGQDAS SIKSPFLDKE SDDASKRNGE  120
IQQLLSLFVD KPSTKDHHQQ QPNSGQVRSS TEKGFSTSQG LLSSEVDLEL RLGPEPQDSL  180
PATSTKRFF*
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.02G128500.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021603784.11e-136transcriptional regulator TAC1-like
TrEMBLA0A2C9WDD61e-135A0A2C9WDD6_MANES; Uncharacterized protein
STRINGcassava4.1_030428m1e-135(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF33353162
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G53820.11e-17C2H2 family protein