PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.02G134000.3.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family C2H2
Protein Properties Length: 460aa    MW: 49988.7 Da    PI: 8.473
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.02G134000.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.54.9e-05379401123
                          EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                          ++C +C+k+Fs+   L  H r H
  Manes.02G134000.3.p 379 FRCDICNKTFSTAQGLGCHKRIH 401
                          89******************999 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576675.09E-55376No hitNo description
SMARTSM003550.165476IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.7855476IPR007087Zinc finger, C2H2
PfamPF139123.5E-85478IPR007087Zinc finger, C2H2
PROSITE patternPS0002805676IPR007087Zinc finger, C2H2
SuperFamilySSF576675.09E-5305324No hitNo description
SuperFamilySSF576674.11E-6376403No hitNo description
Gene3DG3DSA:3.30.160.609.1E-5378402IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015711.198379406IPR007087Zinc finger, C2H2
SMARTSM003550.013379401IPR015880Zinc finger, C2H2-like
PfamPF139121.9E-7379403IPR007087Zinc finger, C2H2
PROSITE patternPS000280381401IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 460 aa     Download sequence    Send to blast
MSFKIILHRR VLLPRLRKLS VKFKLPNNTT MESGGEGEGG GGEGSGSSGK REKHVCEFCG  60
KKFSSGQALG GHKKHHLRIM RNNSKRTQEE EESNIKIKKE EHGGSKRCST SKAGDVEIDS  120
DGKPICYSVQ GSPRNQINSA AEIEAADALL MLSLAPRHGP KTSGYATTSS EKAIRTEIES  180
GSISDHNSKE DEDIIKETTA KKGKEMNYIS NLTNSEIEAA RNLLLLSRAG TYGHGHGHEP  240
ETSGYATTSS GKSIRTEIGS GSGSGIGPDH GSKEDEDITK ETCGLITTKK GKKMNYISKL  300
RNAERKPCES KCSNCGKSFR SRSPCRCKNN SKVQVAESAL PDDDAITAKE IPASKPDKEA  360
GKTGDNDSYH PVASTETSFR CDICNKTFST AQGLGCHKRI HRKAPARPLL NEAALAQASN  420
KEGEEDNTAL NKRYLRQEGE EDNIDLNKPY LMKEGEEDW*
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.02G134000.3.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021598649.10.0uncharacterized protein LOC110604678 isoform X2
TrEMBLA0A251LXK30.0A0A251LXK3_MANES; Uncharacterized protein
STRINGcassava4.1_026658m0.0(Manihot esculenta)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56200.17e-06C2H2 family protein