PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.02G142500.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family GRAS
Protein Properties Length: 470aa    MW: 53050.2 Da    PI: 6.0695
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.02G142500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS467.67e-143454661374
                 GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPi 90 
                          l++lLl+cA++v+sg+le+a+ +L ++s+las dgd+mqR+aayfteALa+r+ +  +++ +al++++ +   +see+ ++klf+e+ P+
  Manes.02G142500.1.p  45 LIHLLLTCANHVASGNLENAEIALGQISQLASADGDTMQRIAAYFTEALAQRIIKALPGVHRALNATRIT--LVSEEILVRKLFFEMLPF 132
                          689*************************************************************999987..7***************** PP

                 GRAS  91 lkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnv 180
                          lk+++l+aNqaI ea+ege++vHiiD+++ +++QW+aLlqaL++Rpegpp+lRiTg+++    +k  l +++++L + Ae+l++pf+fn+
  Manes.02G142500.1.p 133 LKVAFLLANQAIIEAMEGEKMVHIIDLNAAEPAQWLALLQALSARPEGPPHLRITGIHQ----QKWVLDQMAHKLIEEAERLDIPFQFNP 218
                          ***********************************************************....9************************** PP

                 GRAS 181 lvakrledleleeLrvkpgEalaVnlvlqlhrll.......................................................d 215
                           +a +le+l++e+Lrvk+gEala++++lqlh +l                                                        
  Manes.02G142500.1.p 219 -IAGDLENLDIEKLRVKTGEALAISSILQLHPFLasddelrrrspvplknsngihllralqmhqgtlgellekdmvngynpspestsssP 307
                          .799**********************************************************************************9884 PP

                 GRAS 216 esvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaer 305
                          +s s++ + d +L++++slsPk++vv+eq+++hn+++++er+le+l+ y+alfd+le++++r+s er k+E++l g+ei+n+vacegaer
  Manes.02G142500.1.p 308 QSPSTSVKMDYFLNMLWSLSPKLMVVMEQDSNHNGSTLMERLLESLYSYAALFDCLESTVSRTSMERLKMEKMLYGEEIKNIVACEGAER 397
                          4555555699******************************************************************************** PP

                 GRAS 306 rerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                          rerhe+lekW +rl+ aGF++v+ls++ + qa++ll+ ++ dgyr++ee+g++v++W+drpL+svSaWr
  Manes.02G142500.1.p 398 RERHEKLEKWMQRLDLAGFGNVHLSYYGMLQARRLLQGYGCDGYRIKEENGCVVICWQDRPLFSVSAWR 466
                          ********************************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098558.43819446IPR005202Transcription factor GRAS
PfamPF035142.4E-14045466IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009739Biological Processresponse to gibberellin
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 470 aa     Download sequence    Send to blast
MFQDDESSVT SSPLQFFSMM SLSPGIGSQY PWLRELKSEE RGLYLIHLLL TCANHVASGN  60
LENAEIALGQ ISQLASADGD TMQRIAAYFT EALAQRIIKA LPGVHRALNA TRITLVSEEI  120
LVRKLFFEML PFLKVAFLLA NQAIIEAMEG EKMVHIIDLN AAEPAQWLAL LQALSARPEG  180
PPHLRITGIH QQKWVLDQMA HKLIEEAERL DIPFQFNPIA GDLENLDIEK LRVKTGEALA  240
ISSILQLHPF LASDDELRRR SPVPLKNSNG IHLLRALQMH QGTLGELLEK DMVNGYNPSP  300
ESTSSSPQSP STSVKMDYFL NMLWSLSPKL MVVMEQDSNH NGSTLMERLL ESLYSYAALF  360
DCLESTVSRT SMERLKMEKM LYGEEIKNIV ACEGAERRER HEKLEKWMQR LDLAGFGNVH  420
LSYYGMLQAR RLLQGYGCDG YRIKEENGCV VICWQDRPLF SVSAWRCRK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A1e-61334687381Protein SCARECROW
5b3h_A1e-61334686380Protein SCARECROW
5b3h_D1e-61334686380Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.02G142500.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021605214.10.0scarecrow-like protein 3
SwissprotQ9LPR80.0SCL3_ARATH; Scarecrow-like protein 3
TrEMBLA0A2C9WG470.0A0A2C9WG47_MANES; Uncharacterized protein
STRINGcassava4.1_006968m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF23833484
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50420.10.0scarecrow-like 3
Publications ? help Back to Top
  1. Gong X, et al.
    SEUSS Integrates Gibberellin Signaling with Transcriptional Inputs from the SHR-SCR-SCL3 Module to Regulate Middle Cortex Formation in the Arabidopsis Root.
    Plant Physiol., 2016. 170(3): p. 1675-83
    [PMID:26818732]
  2. Lee SA, et al.
    Interplay between ABA and GA Modulates the Timing of Asymmetric Cell Divisions in the Arabidopsis Root Ground Tissue.
    Mol Plant, 2016. 9(6): p. 870-84
    [PMID:26970019]
  3. Choi JW,Lim J
    Control of Asymmetric Cell Divisions during Root Ground Tissue Maturation.
    Mol. Cells, 2016. 39(7): p. 524-9
    [PMID:27306644]