PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.02G144400.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family Nin-like
Protein Properties Length: 225aa    MW: 26357.3 Da    PI: 6.6863
Description Nin-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.02G144400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1RWP-RK79.43.9e-25116164452
               RWP-RK   4 eisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 
                           +++e+++k+F++pi++AAke++v+lTvLK++CR++ I+RWPhRkiksl
  Manes.02G144400.1.p 116 PLEMEEIRKHFDKPITKAAKEMKVGLTVLKKRCRELSIMRWPHRKIKSL 164
                          6899*******************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5151916.60899185IPR003035RWP-RK domain
PfamPF020421.2E-21117164IPR003035RWP-RK domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009793Biological Processembryo development ending in seed dormancy
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 225 aa     Download sequence    Send to blast
MDSKITVELM NFPKNDTDCF LMDEYFERLS ELSPLESFLE FDSLSLPYDT NFGFEDYLLE  60
NGHPLSWDVD IPIDAKPLRV FTSTIDNTVK YDDDFTGTSS NEEEKRVIMG RKRSAPLEME  120
EIRKHFDKPI TKAAKEMKVG LTVLKKRCRE LSIMRWPHRK IKSLKSLIRN VKEKGLTNEA  180
VMLEEHQRLL EKMPDMELND STKKLRQAIF KDNYKKRRCL EAHA*
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.02G144400.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021605709.11e-165protein RKD4-like
TrEMBLA0A2C9WGI71e-164A0A2C9WGI7_MANES; Uncharacterized protein
STRINGcassava4.1_021485m1e-142(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF68983247
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G53040.12e-43RWP-RK domain-containing protein