PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.02G145300.2.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family MIKC_MADS
Protein Properties Length: 235aa    MW: 26488.7 Da    PI: 7.4088
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.02G145300.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF89.51.8e-28959151
                         S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
               SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                         k+i+n + rqvtfskRr g++KKAeELSvLCdaeva+iifs tgkl+ey+s
  Manes.02G145300.2.p  9 KKIDNITARQVTFSKRRRGLFKKAEELSVLCDAEVALIIFSATGKLFEYCS 59
                         68***********************************************96 PP
2K-box44.66.3e-16911711999
                K-box  19 qelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkle 99 
                           + a L+kei +  +++R+++Ge+L+ L+++eLqqLe+ Le +l+++ ++K + ++++i  l kk  +l eenk+L++k++
  Manes.02G145300.2.p  91 SHRAHLNKEIAEKTQQLRQMMGENLQGLDIEELQQLEKLLEAGLSRVLETKGDKMMNEILMLEKKGAQLLEENKQLKEKMM 171
                          55678999999999999*************************************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006629.899161IPR002100Transcription factor, MADS-box
SMARTSM004323.1E-39160IPR002100Transcription factor, MADS-box
SuperFamilySSF554556.54E-31374IPR002100Transcription factor, MADS-box
PRINTSPR004045.3E-27323IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PfamPF003193.7E-251057IPR002100Transcription factor, MADS-box
CDDcd002653.55E-341275No hitNo description
PRINTSPR004045.3E-272338IPR002100Transcription factor, MADS-box
PRINTSPR004045.3E-273859IPR002100Transcription factor, MADS-box
PROSITE profilePS5129712.83886177IPR002487Transcription factor, K-box
PfamPF014861.9E-1594170IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 235 aa     Download sequence    Send to blast
MAREKIKIKK IDNITARQVT FSKRRRGLFK KAEELSVLCD AEVALIIFSA TGKLFEYCSS  60
STKDVIARYN LHSNNLDKLE RPSLELELEN SHRAHLNKEI AEKTQQLRQM MGENLQGLDI  120
EELQQLEKLL EAGLSRVLET KGDKMMNEIL MLEKKGAQLL EENKQLKEKM MRILSKGKGP  180
ALLEWDGGIH QEEGMSSESA TNFCSYPTGP PLPLADDSYY TSLKLGLGCC RIIV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A7e-19169169MEF2C
5f28_B7e-19169169MEF2C
5f28_C7e-19169169MEF2C
5f28_D7e-19169169MEF2C
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor that coordinates gene expression underlying the differentiation of the pedicel abscission zone. May also be involved in the maintenance of the inflorescence meristem state.
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.02G145300.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021605291.11e-171MADS-box protein AGL24-like isoform X2
SwissprotQ9FUY64e-88JOIN_SOLLC; MADS-box protein JOINTLESS
TrEMBLA0A2C9WDX21e-170A0A2C9WDX2_MANES; Uncharacterized protein
STRINGcassava4.1_013975m1e-163(Manihot esculenta)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22540.13e-82MIKC_MADS family protein
Publications ? help Back to Top
  1. Nakano T,Kato H,Shima Y,Ito Y
    Apple SVP Family MADS-Box Proteins and the Tomato Pedicel Abscission Zone Regulator JOINTLESS have Similar Molecular Activities.
    Plant Cell Physiol., 2015. 56(6): p. 1097-106
    [PMID:25746985]