PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.02G149100.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family HD-ZIP
Protein Properties Length: 267aa    MW: 30883.2 Da    PI: 4.7995
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.02G149100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox61.21.7e-1957110356
                          --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
             Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                          k++++t +q+++Le+ Fe ++++  e++++LA++lgL+ rqV +WFqNrRa++k
  Manes.02G149100.1.p  57 KKRRLTLDQVKALEKTFEVENKLEPERKQRLAEELGLQPRQVAIWFQNRRARWK 110
                          56689************************************************9 PP
2HD-ZIP_I/II122.22.5e-3956148193
          HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLree 90 
                          ekkrrl+ +qvk+LE++Fe e+kLeperK++la+eLglqprqva+WFqnrRAR+ktkqlEk+y aLk++y+ lk + ++Le+++e+L  +
  Manes.02G149100.1.p  56 EKKRRLTLDQVKALEKTFEVENKLEPERKQRLAEELGLQPRQVAIWFQNRRARWKTKQLEKEYVALKANYEDLKLNYDNLERQNESLVLQ 145
                          69*************************************************************************************999 PP

          HD-ZIP_I/II  91 lke 93 
                          lke
  Manes.02G149100.1.p 146 LKE 148
                          986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466892.72E-1950114IPR009057Homeodomain-like
PROSITE profilePS5007117.83152112IPR001356Homeobox domain
SMARTSM003892.0E-1855116IPR001356Homeobox domain
CDDcd000866.55E-1657113No hitNo description
PfamPF000468.3E-1757110IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.5E-1959118IPR009057Homeodomain-like
PRINTSPR000317.5E-68392IPR000047Helix-turn-helix motif
PROSITE patternPS00027087110IPR017970Homeobox, conserved site
PRINTSPR000317.5E-692108IPR000047Helix-turn-helix motif
PfamPF021834.0E-13112153IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 267 aa     Download sequence    Send to blast
MKRFSSSDSL AALVSTSSSK EEKTQNQTQG YTKEFQAMLD NLEEEDYTED ATHTAEKKRR  60
LTLDQVKALE KTFEVENKLE PERKQRLAEE LGLQPRQVAI WFQNRRARWK TKQLEKEYVA  120
LKANYEDLKL NYDNLERQNE SLVLQLKELK AKLREENADS SNSVKEEECP VSVSENNISV  180
QSQSHEISDN ENSNPTIKDQ ISGLSSHPLM NWIQLSESRT ILGNGFQVYQ PHVVKLEEQN  240
LFNTEESCNF FSVDQAPTLH WHFPEL*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1104112RRARWKTKQ
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.02G149100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021604361.10.0homeobox-leucine zipper protein ATHB-6-like
TrEMBLA0A2C9WGD40.0A0A2C9WGD4_MANES; Uncharacterized protein
STRINGcassava4.1_014014m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF18683489
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G40060.18e-64homeobox protein 16