PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.02G154400.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family ERF
Protein Properties Length: 356aa    MW: 39070.6 Da    PI: 6.6771
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.02G154400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP265.41.2e-20160209255
                  AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                           y+GVr+++ +g+WvAeIr p++   r+r +lg+f+taeeAa a+++a+ kl+g
  Manes.02G154400.1.p 160 LYRGVRQRH-WGKWVAEIRLPKN---RTRLWLGTFDTAEEAALAYDKAAYKLRG 209
                          59******9.**********965...5*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000187.74E-34159219No hitNo description
PROSITE profilePS5103223.143160217IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.4E-32160218IPR001471AP2/ERF domain
SuperFamilySSF541713.6E-23160218IPR016177DNA-binding domain
SMARTSM003807.0E-38160223IPR001471AP2/ERF domain
PfamPF008473.5E-14161209IPR001471AP2/ERF domain
PRINTSPR003673.4E-11161172IPR001471AP2/ERF domain
PRINTSPR003673.4E-11183199IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 356 aa     Download sequence    Send to blast
MAAIMDFYSS RHPQSAPFGG ELMEALEPFM KSASSSTTPS PSSLPPLPST SYNYLPFSYS  60
PSASQDQAFF HPDGCSTSTT LQFSTGFSID DPTALQQPGS IGLNHLTPTQ IHQIQTQVQL  120
QNQNGFHFQS YYNQNHHTPS FLGPKPIPMK QVGSPKPTKL YRGVRQRHWG KWVAEIRLPK  180
NRTRLWLGTF DTAEEAALAY DKAAYKLRGD FARLNFPNLR HQGSHIQGKF GEYKPLPSSV  240
DAKLEAICES LAESQKQGGK AEKKSSTKKK AQVGTTPVLA AAKEDESQQE DALVKCCKVE  300
TPSPLLTESE GSGGSSPLSD LTFPDFEEAP LDVDSGNFNL EKYPSYEIDW ASLLS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A1e-21159217160ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.02G154400.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHQ9021460.0HQ902146.1 Hevea brasiliensis cultivar CATAS7-33-97 DREB1p mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021604425.10.0ethylene-responsive transcription factor RAP2-4-like
SwissprotQ8H1E44e-97RAP24_ARATH; Ethylene-responsive transcription factor RAP2-4
TrEMBLA0A2C9WE680.0A0A2C9WE68_MANES; Uncharacterized protein
STRINGcassava4.1_023527m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF105732109
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G78080.12e-60related to AP2 4
Publications ? help Back to Top
  1. Pati A,Vasquez-Robinet C,Heath LS,Grene R,Murali TM
    XcisClique: analysis of regulatory bicliques.
    BMC Bioinformatics, 2006. 7: p. 218
    [PMID:16630346]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Iwase A, et al.
    WIND1-based acquisition of regeneration competency in Arabidopsis and rapeseed.
    J. Plant Res., 2015. 128(3): p. 389-97
    [PMID:25810222]
  4. Ikeuchi M, et al.
    PRC2 represses dedifferentiation of mature somatic cells in Arabidopsis.
    Nat Plants, 2015. 1: p. 15089
    [PMID:27250255]
  5. Iwase A, et al.
    WIND1 Promotes Shoot Regeneration through Transcriptional Activation of ENHANCER OF SHOOT REGENERATION1 in Arabidopsis.
    Plant Cell, 2017. 29(1): p. 54-69
    [PMID:28011694]