PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.02G160100.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family C2H2
Protein Properties Length: 428aa    MW: 46870.3 Da    PI: 9.7454
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.02G160100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H218.55.5e-06194216223
                          EETTTTEEESSHHHHHHHHHH.T CS
              zf-C2H2   2 kCpdCgksFsrksnLkrHirt.H 23 
                          +Cp Cg+ F   +nL++H+ + H
  Manes.02G160100.1.p 194 SCPECGEIFAKAENLEVHQAVrH 216
                          8******************9888 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.604.3E-4192212IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS501579.452193221IPR007087Zinc finger, C2H2
PROSITE patternPS000280193216IPR007087Zinc finger, C2H2
SuperFamilySSF563998.44E-23218426No hitNo description
Gene3DG3DSA:3.90.228.105.2E-15219425IPR012317Poly(ADP-ribose) polymerase, catalytic domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0003950Molecular FunctionNAD+ ADP-ribosyltransferase activity
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 428 aa     Download sequence    Send to blast
MAKPKPTAKS IKEIHQNQNQ RPKRSEKPAS WSVVRGLFTC KDQQRQQQQQ QKQPQQEKQE  60
QQQKKKHQEQ ALEETSSKKC KKMKCSGSLC SNTKVMQRPE TASPDVQKKR VSMGLTTGND  120
NSSRSIKAPL NEINGVPSST NSSLSVSSNS SINNGGSFRG MPFRRLSGCY ECRMVVDPVL  180
GFTRDPSLRS SICSCPECGE IFAKAENLEV HQAVRHAVSE LGPEDTSKNI VEIIFQSSWL  240
KKQAPICQID RILKVHNTQR TISKFEEYRD SIKAKATKLS KKHPRCIADG NELLRFYCTS  300
FACSLGLNGS SNLCNSVPHC GVCSIIKNGF KESSGGGVNG NGILTTATSG KAHDKAAILD  360
GSNGSSDKRA MLVCRVIAGR VKKSVEGNME EYDSVAGAVG LYSNLDELHV FNARAILPCF  420
VVIYSGF*
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.02G160100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021603575.10.0uncharacterized protein LOC110608614
TrEMBLA0A2C9WH070.0A0A2C9WH07_MANES; Uncharacterized protein
STRINGcassava4.1_008183m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF84732128
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75710.11e-104C2H2-like zinc finger protein