PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.02G168500.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family MIKC_MADS
Protein Properties Length: 213aa    MW: 25251.8 Da    PI: 8.2265
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.02G168500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF90.11.2e-28959151
                         S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
               SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                         krien+snrqvt+skRrngi+KKA+E+ vLCda+v+++if+s+gk++ey+s
  Manes.02G168500.1.p  9 KRIENSSNRQVTYSKRRNGIIKKAKEITVLCDAQVSLVIFASSGKMHEYCS 59
                         79***********************************************96 PP
2K-box70.93.8e-2471167196
                K-box   1 yqkssgks.leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqe 89 
                          y+k+sgks l++ak+e+l++e++++kke++n+q e+Rhl+Ged++sL ++eL+ +e++L+++l ++R+k +e++ ++  +    e+++++
  Manes.02G168500.1.p  71 YHKQSGKSrLWDAKHENLSNEIDRIKKENDNMQIELRHLKGEDITSLHHQELMVIEEALDNGLASVRDKMMEYYNMKKTNDEILEDMNKR 160
                          789999999***************************************************************999998888888888777 PP

                K-box  90 enkaLrk 96 
                               ++
  Manes.02G168500.1.p 161 LRFFWQQ 167
                          6665555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004328.9E-40160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006632.324161IPR002100Transcription factor, MADS-box
SuperFamilySSF554553.53E-34297IPR002100Transcription factor, MADS-box
CDDcd002652.64E-41279No hitNo description
PRINTSPR004041.4E-28323IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PfamPF003191.3E-221057IPR002100Transcription factor, MADS-box
PRINTSPR004041.4E-282338IPR002100Transcription factor, MADS-box
PRINTSPR004041.4E-283859IPR002100Transcription factor, MADS-box
PfamPF014861.1E-1583162IPR002487Transcription factor, K-box
PROSITE profilePS5129713.10585171IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 213 aa     Download sequence    Send to blast
MGRGKIEIKR IENSSNRQVT YSKRRNGIIK KAKEITVLCD AQVSLVIFAS SGKMHEYCSP  60
STTLIDILDR YHKQSGKSRL WDAKHENLSN EIDRIKKEND NMQIELRHLK GEDITSLHHQ  120
ELMVIEEALD NGLASVRDKM MEYYNMKKTN DEILEDMNKR LRFFWQQQEM AMEENVREME  180
NPYHQQRVRD YNSQMPFAFR VQPIQPNLQE RM*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6byy_A1e-16175173MEF2 CHIMERA
6byy_B1e-16175173MEF2 CHIMERA
6byy_C1e-16175173MEF2 CHIMERA
6byy_D1e-16175173MEF2 CHIMERA
6bz1_A1e-16192183MEF2 CHIMERA
6bz1_B1e-16192183MEF2 CHIMERA
6bz1_C1e-16192183MEF2 CHIMERA
6bz1_D1e-16192183MEF2 CHIMERA
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may play role in specifying stamen and petal organ identity. {ECO:0000269|PubMed:23181568, ECO:0000269|Ref.1, ECO:0000305|PubMed:17920788}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.02G168500.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021605746.11e-158floral homeotic protein PMADS 2-like
SwissprotQ0HA251e-123MADS9_VITVI; Agamous-like MADS-box protein MADS9
TrEMBLA0A2C9WHA61e-157A0A2C9WHA6_MANES; Uncharacterized protein
STRINGcassava4.1_026045m1e-158(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF43553255
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G20240.13e-88MIKC_MADS family protein
Publications ? help Back to Top
  1. Jaillon O, et al.
    The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla.
    Nature, 2007. 449(7161): p. 463-7
    [PMID:17721507]
  2. Díaz-Riquelme J,Lijavetzky D,Martínez-Zapater JM,Carmona MJ
    Genome-wide analysis of MIKCC-type MADS box genes in grapevine.
    Plant Physiol., 2009. 149(1): p. 354-69
    [PMID:18997115]
  3. Grimplet J,Martínez-Zapater JM,Carmona MJ
    Structural and functional annotation of the MADS-box transcription factor family in grapevine.
    BMC Genomics, 2016. 17: p. 80
    [PMID:26818751]