PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.02G179100.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family Trihelix
Protein Properties Length: 630aa    MW: 69379.3 Da    PI: 6.7176
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.02G179100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix94.79.1e-3077161187
             trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 
                          rW++qe+laL+++r++m+ ++r+++ k+plWeevs+k++e g++rs+k+Ckek+en+ k++k++keg+ ++  ++ +t+++fdqlea
  Manes.02G179100.1.p  77 RWPRQETLALLKIRSDMDVAFRDASVKGPLWEEVSRKLAELGYNRSAKKCKEKFENVYKYHKRTKEGRTGK--QEGKTYRFFDQLEA 161
                          8********************************************************************96..55557*******85 PP
2trihelix106.71.5e-33455540187
             trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 
                          rW+k ev+aLi++r+ ++++++++  k+plWee+s+ mr+ g++r++k+Ckekwen+nk+ykk+ke++kkr +e+s+tcpyf+ql+a
  Manes.02G179100.1.p 455 RWPKVEVQALINLRTTLDSKYQENGPKGPLWEEISAGMRKLGYNRNAKRCKEKWENINKYYKKVKESNKKR-PEDSKTCPYFHQLDA 540
                          8*********************************************************************8.99***********85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007173.6E-474136IPR001005SANT/Myb domain
CDDcd122032.93E-2576141No hitNo description
PfamPF138372.5E-1976161No hitNo description
PROSITE profilePS500907.07376134IPR017877Myb-like domain
SMARTSM007179.7E-4452514IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.609.3E-4454511IPR009057Homeodomain-like
PROSITE profilePS500906.992454512IPR017877Myb-like domain
CDDcd122032.23E-29454519No hitNo description
PfamPF138372.2E-23454541No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010192Biological Processmucilage biosynthetic process
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 630 aa     Download sequence    Send to blast
MLGDSSSVLA TTTTAAAGGS SSDPPAAAPP HTLSTYQLPG GGTHESISEV GHVGSNNSGA  60
DDKGRGDEGD RSFGGNRWPR QETLALLKIR SDMDVAFRDA SVKGPLWEEV SRKLAELGYN  120
RSAKKCKEKF ENVYKYHKRT KEGRTGKQEG KTYRFFDQLE AFENQPSSFS SPPPPQTQQP  180
PQQQQLKPQT PAVTTIGMQV AHPSPPPPPV GAAPISTVPS NTAPSATMVS QGIVTTGINL  240
TIPSFPTGNP TILPSAQATN PTMNPSSFSN FSPDLLSNST SSSTSSDVEL HGRHRKKRKW  300
KEFFDRIMKE VIHKQEDMQR KFLEAIEKRE HDRMAREESW RMQEMARINR EREILAQERS  360
IAAAKDAAIM AFLQKLSDQQ NPGQPQNTPP PPPAATPTPI PVPVSVPVPA PVPVPAPQPI  420
TMVPVAQAAP PQPATNLETK SDSGDQSLTP ASSSRWPKVE VQALINLRTT LDSKYQENGP  480
KGPLWEEISA GMRKLGYNRN AKRCKEKWEN INKYYKKVKE SNKKRPEDSK TCPYFHQLDA  540
LYKEKNKNDS SSNIQLKPEN SVPLMVRPEQ QWPPPQQEHG PDSVMEDLES EDHQNHQDED  600
DKDNDDDEED EAGGYEIVAN RQATISSAG*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that binds specific DNA sequence. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00243DAPTransfer from AT1G76880Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.02G179100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCU2276022e-61CU227602.1 Populus EST from severe drought-stressed leaves.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021605054.10.0trihelix transcription factor GT-2-like
SwissprotQ391171e-143TGT2_ARATH; Trihelix transcription factor GT-2
TrEMBLA0A2C9WHK50.0A0A2C9WHK5_MANES; Uncharacterized protein
STRINGcassava4.1_030224m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF37334181
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76880.11e-81Trihelix family protein