PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.02G179200.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family Trihelix
Protein Properties Length: 596aa    MW: 66760.9 Da    PI: 7.2718
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.02G179200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix96.13.2e-3064147186
             trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                          rW++qe+laL+++r++m++ +r+++lk+plWeevs+k++e g++rs+k+Ckek+en+ k++k++keg+ +++++  +t+++fdql+
  Manes.02G179200.1.p  64 RWPRQETLALLKIRSDMDSVFRDSNLKGPLWEEVSRKLAELGYHRSAKKCKEKFENVYKYHKRTKEGRTGKSQG--KTYKFFDQLQ 147
                          8********************************************************************97544..47******98 PP
2trihelix103.31.8e-32415500187
             trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 
                          rW+k ev aLi++r++++++++++  k++lWee+s+ m++ g++rs+k+Ckekwen+nk++kk+ke++kkr +e+s+tcpyf+ql+a
  Manes.02G179200.1.p 415 RWPKVEVEALINLRTNLDTKYQENGPKGNLWEEISSGMKKLGYNRSSKRCKEKWENINKYFKKVKESNKKR-PEDSKTCPYFHQLDA 500
                          8*********************************************************************8.99***********85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500906.99257121IPR017877Myb-like domain
SMARTSM007170.02361123IPR001005SANT/Myb domain
CDDcd122031.74E-2563128No hitNo description
PfamPF138371.1E-2063149No hitNo description
PROSITE profilePS500907.782408472IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.606.5E-5411471IPR009057Homeodomain-like
SMARTSM007179.3E-5412474IPR001005SANT/Myb domain
CDDcd122031.00E-27414479No hitNo description
PfamPF138371.0E-22414501No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 596 aa     Download sequence    Send to blast
MQGDSNNTVL PTSGHVVVTA TMVHEGGQVG AAVAATAPNN LSGEEDKSII RVDEGDQMSY  60
GSNRWPRQET LALLKIRSDM DSVFRDSNLK GPLWEEVSRK LAELGYHRSA KKCKEKFENV  120
YKYHKRTKEG RTGKSQGKTY KFFDQLQALE NHHYQSQLPS PPTQPPPKPQ PPIIAAATLP  180
WSSNPPSVSH ATVPLNNFTA PSPDPAINAM PISSSQPLNP SQTNFPSFQN LTSHLFSSST  240
SSSTASDEGF QGTRKIKKKR KWKYFFERLT KDVIKKQEEL QRKFLETVEK HELERMAREE  300
AWRMQEMSRI IREHEIFVHE RTTAAAKDAA VIAFLQKISG QQNSIQILDI PQPPTSVAAP  360
VPSPAPLPAP THVNATAPPQ PRPAPPAPCV SVVMDYWDVM KKDNGQTDDI LRSSRWPKVE  420
VEALINLRTN LDTKYQENGP KGNLWEEISS GMKKLGYNRS SKRCKEKWEN INKYFKKVKE  480
SNKKRPEDSK TCPYFHQLDA LYKEKSKPNE SNNLSNYGGH ASLHHPITTM EPLIARPEQQ  540
WPLQQQEKIL MDLDADIEDD DDDNDGDTEE EDEGGGGSCF EVVASKPATS LGNGE*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that binds specific DNA sequence. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.02G179200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021600793.10.0trihelix transcription factor GT-2-like
SwissprotQ391171e-139TGT2_ARATH; Trihelix transcription factor GT-2
TrEMBLA0A2C9WGF50.0A0A2C9WGF5_MANES; Uncharacterized protein
STRINGcassava4.1_004089m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF37334181
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76880.11e-141Trihelix family protein