PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Manes.02G180900.1.p

Organism

Manihot esculenta

Taxonomic ID

3983

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot

Family

LBD

Protein Properties

Length: 115aa MW: 12925.3 Da PI: 8.8389

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Manes.02G180900.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	52	2e-16	67	113	1	47
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllk 47 +Ca C +lrr+ a++Cvla+yfp +pkkf ++h++FGasn++k+l+ Manes.02G180900.1.p 67 PCATCEILRRRSAEKCVLARYFPLIEPKKFTIAHRVFGASNIIKFLQ 113 7********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	14.764	66	114	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	6.4E-15	67	113	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 115 aa Download sequence Send to blast
MHCRLLISDH EVTLSNLLPP FHTVVDYSQK DREVCYRPLS SSAVAPSSLV ELLIGRSSRC 60 CRCCLSPCAT CEILRRRSAE KCVLARYFPL IEPKKFTIAH RVFGASNIIK FLQL*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Manes.02G180900.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	A0A2C9WFD2	3e-76	A0A2C9WFD2_MANES; Uncharacterized protein
STRING	cassava4.1_032310m	2e-76	(Manihot esculenta)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G07900.1	1e-20	LOB domain-containing protein 1

Link Out ? help Back to Top
Phytozome	Manes.02G180900.1.p