PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.02G189600.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family WRKY
Protein Properties Length: 555aa    MW: 61404.4 Da    PI: 7.6533
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.02G189600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY104.94.2e-33228285260
                          --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
                 WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 
                          +DgynWrKYGqK+vkgse+prsYY+Ct+++C +kkkvers  d++++ei+Y+g+Hnh+k
  Manes.02G189600.1.p 228 EDGYNWRKYGQKQVKGSENPRSYYKCTYPNCLTKKKVERSL-DGQITEIVYKGTHNHPK 285
                          7****************************************.***************85 PP
2WRKY106.71.2e-33400458159
                          ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                 WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                          ldDgy+WrKYGqK+vkg+++prsYY+Cts+gCpv+k+ver+++d ++v++tYeg+Hnh+
  Manes.02G189600.1.p 400 LDDGYRWRKYGQKVVKGNPNPRSYYKCTSPGCPVRKHVERASHDLRAVITTYEGKHNHD 458
                          59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.803.4E-28215286IPR003657WRKY domain
PROSITE profilePS5081123.548222286IPR003657WRKY domain
SuperFamilySSF1182902.88E-25223286IPR003657WRKY domain
SMARTSM007745.2E-36227285IPR003657WRKY domain
PfamPF031065.7E-25228284IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.2E-37385460IPR003657WRKY domain
SuperFamilySSF1182902.35E-29392460IPR003657WRKY domain
PROSITE profilePS5081138.538395460IPR003657WRKY domain
SMARTSM007742.0E-39400459IPR003657WRKY domain
PfamPF031067.8E-26401458IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009788Biological Processnegative regulation of abscisic acid-activated signaling pathway
GO:0009938Biological Processnegative regulation of gibberellic acid mediated signaling pathway
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 555 aa     Download sequence    Send to blast
MTSSSGSLDT SANSHPLGFS FSTHSFMTTS FSDLLASGAD DEPVNTKTQN HRRGLSDRIA  60
ERTGSGVPKF KSIPPPSLPL SPPAVSPSSY FAIPPGLSPT ELLDSPVLLN TSNILPSPTT  120
GTFPALPAIW KTNSDRNQQN VKQEDPNYYD FSFQPQTRPS TNSSTMFQSS NTTIQSAQQQ  180
GWSFQESVKQ DDLAMGKNVR SFSPEIAAIQ TLREQQQNQS VRDQKRSEDG YNWRKYGQKQ  240
VKGSENPRSY YKCTYPNCLT KKKVERSLDG QITEIVYKGT HNHPKPQSTR RSSSSFSSAS  300
NQAMIASNLA SSEMQAQSLI THGSRQMDSV PTPENSSISM EDDDFDSQKS RSRSDELDED  360
EPVAKRWKAE GENEGISAPG SRTVREPRVV VQTTSDIDIL DDGYRWRKYG QKVVKGNPNP  420
RSYYKCTSPG CPVRKHVERA SHDLRAVITT YEGKHNHDIP AARGSNSVNR PLPENYNGRS  480
NSNNNAAAMA TRPSSVNHPQ APFSLEMFQN PENFAFSGFG DPVGSYTNQS LSEHVFSRAK  540
EEPRDDIFLE SLLC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A3e-38228461878Probable WRKY transcription factor 4
2lex_A3e-38228461878Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription repressor (By similarity). Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. Negative regulator of both gibberellic acid (GA) and abscisic acid (ABA) signaling in aleurone cells, probably by interfering with GAM1, via the specific repression of GA- and ABA-induced promoters (By similarity). {ECO:0000250|UniProtKB:Q6IEQ7, ECO:0000250|UniProtKB:Q6QHD1}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.02G189600.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by abscisic acid (ABA) in aleurone cells, embryos, roots and leaves (PubMed:25110688). Slightly down-regulated by gibberellic acid (GA) (By similarity). Accumulates in response to jasmonic acid (MeJA) (PubMed:16919842). {ECO:0000250|UniProtKB:Q6IEQ7, ECO:0000269|PubMed:16919842, ECO:0000269|PubMed:25110688}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKT8276430.0KT827643.1 Manihot esculenta WRKY transcription factor 68 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021605353.10.0probable WRKY transcription factor 26
SwissprotQ6B6R41e-129WRK24_ORYSI; WRKY transcription factor WRKY24
TrEMBLA0A2C9WGQ90.0A0A2C9WGQ9_MANES; Uncharacterized protein
STRINGcassava4.1_007752m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF107734114
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38470.11e-112WRKY DNA-binding protein 33
Publications ? help Back to Top
  1. Basu S,Roychoudhury A
    Expression profiling of abiotic stress-inducible genes in response to multiple stresses in rice (Oryza sativa L.) varieties with contrasting level of stress tolerance.
    Biomed Res Int, 2014. 2014: p. 706890
    [PMID:25110688]